Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_027365.1 Length=58076 Score E Sequences producing significant alignments: (Bits) Value seq75625 84.2 8e-12 >seq75625 Length=8981 Score = 84.2 bits (92), Expect = 8e-12 Identities = 135/187 (72%), Gaps = 14/187 (7%) Strand=Plus/Minus Query 44148 AAGAACCTGCTCGGTATGCCGTGGCGCGTGGCGCTGGCGCTGCAGGACGACGGCTGGATT 44207 ||| ||||| |||| || ||||||||||| || | |||||||||| ||||||||| Sbjct 8725 AAGGACCTGATCGGCATCCCGTGGCGCGTCGCCTTCGCGCTGCAGGCAGACGGCTGGTGG 8666 Query 44208 CTGCGCAACGACGTTGTGTGGCAGAAGCCCAACGCGATCCCGCAG----TCGAGCCGCGA 44263 |||||| | ||| | | ||| |||||||||| |||| ||| || ||||| || Sbjct 8665 CTGCGCCAGGACATCATCTGGTCGAAGCCCAACCCGATGCCGGAGAGCATCGAG----GA 8610 Query 44264 CCGGCTCAC-CGGCCGCTACGAGCACGTGTTCCTGTTCGTCAAGCAGTCGAGC--TACTG 44320 ||| ||| | ||| ||||| || |||||||| || || | || ||||| ||| | Sbjct 8609 CCGTTGCACGAAGGCGC-ACGAGTACCTGTTCCTGCTC-TCGAAGAG-CGAGCGGTACCG 8553 Query 44321 GTTCGAC 44327 |||||| Sbjct 8552 CTTCGAC 8546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185429431600656