Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq113932 107 2e-18 seq106905 107 2e-18 seq97232 107 2e-18 seq86460 107 2e-18 seq64237 105 6e-18 seq115941 104 2e-17 seq86116 93.3 4e-14 seq109654 91.5 1e-13 >seq113932 Length=32622 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || || || || || ||||| || ||| ||| || |||| || Sbjct 27622 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCGGC-CGTCCTC 27564 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||| || |||||| | ||||||||||| || ||||| || | ||||| || || Sbjct 27563 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 27504 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| || | | || | ||||| | | ||||| ||||| ||||| | ||| Sbjct 27503 GATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTT 27444 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 ||||| || |||||||| ||||| ||||| |||| Sbjct 27443 ACCCGTTAGGGTTTTCACGAAGATCTGCATGACTGC 27408 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || || || || || ||||| || ||| ||| || |||| || Sbjct 19541 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCGGC-CGTCCTC 19483 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||| || |||||| | ||||||||||| || ||||| || | ||||| || || Sbjct 19482 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 19423 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| || | | || | ||||| | | ||||| ||||| ||||| | ||| Sbjct 19422 GATCTTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCAACCTCTAGGGTTATGGTTTT 19363 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || |||||||| ||||| ||||| Sbjct 19362 ACCCGTTAGGGTTTTCACGAAGATCTGCAT 19333 >seq106905 Length=25706 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || || || || || ||||| || ||| ||| || |||| || Sbjct 9532 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCGGC-CGTCCTC 9474 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||| || |||||| | ||||||||||| || ||||| || | ||||| || || Sbjct 9473 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 9414 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| || | | || | ||||| | | ||||| ||||| ||||| | ||| Sbjct 9413 GATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTT 9354 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 ||||| || |||||||| ||||| ||||| |||| Sbjct 9353 ACCCGTTAGGGTTTTCACGAAGATCTGCATGACTGC 9318 >seq97232 Length=18783 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || || || || || ||||| || ||| ||| || |||| || Sbjct 12306 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCGGC-CGTCCTC 12364 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||| || |||||| | ||||||||||| || ||||| || | ||||| || || Sbjct 12365 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 12424 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| || | | || | ||||| | | ||||| ||||| ||||| | ||| Sbjct 12425 GATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTT 12484 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 ||||| || |||||||| ||||| ||||| |||| Sbjct 12485 ACCCGTTAGGGTTTTCACGAAGATCTGCATGACTGC 12520 >seq86460 Length=13305 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || || || || || ||||| || ||| ||| || |||| || Sbjct 12068 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCGGC-CGTCCTC 12010 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||| || |||||| | ||||||||||| || ||||| || | ||||| || || Sbjct 12009 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 11950 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| || | | || | ||||| | | ||||| ||||| ||||| | ||| Sbjct 11949 GATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTTATGGTTTT 11890 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 ||||| || |||||||| ||||| ||||| |||| Sbjct 11889 ACCCGTTAGGGTTTTCACGAAGATCTGCATGACTGC 11854 >seq64237 Length=5233 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || || || || || ||||| || ||| ||| || |||| || Sbjct 3108 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCTAGGGTTCGGC-CGTCCTC 3166 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||| || |||||| | ||||||||||| || ||||| || | ||||| || || Sbjct 3167 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTG 3226 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| || | | || | ||||| | | ||||| ||||| ||||| | ||| Sbjct 3227 GATCTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCAACCTCTAGGGTTATGGTTTT 3286 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || |||||||| ||||| ||||| Sbjct 3287 ACCCGTTAGGGTTTTCACGAAGATCTGCAT 3316 >seq115941 Length=36387 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||||||||| | || || || ||||| ||||| |||||| || | |||| ||||||| Sbjct 5595 TACCAAATGGAGGGTCGATTCCTTTTGGATATTATAGTCGGCCAGGGTGCGACCGTCTTC 5654 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||| || || ||| |||| || | ||| ||||| || || | ||||| || || Sbjct 5655 GAGCTGCTTTCCAGCGAAAATCAGCCTCTGCTGATCTGGGGGAATCCCCTCCTTGTCTTG 5714 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| || | | |||| || || | || || |||||||| || | || Sbjct 5715 GATCTTAGCCTTGACATTGTCTATGGTATCCGAACTCTCGACCTCTAGAGTGATGGTCTT 5774 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||||||| ||||||||||| Sbjct 5775 ACCGGTTAGGGTTTTCACGAAGATTTGCAT 5804 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | ||||| || || ||||| ||||| || || ||| | | | || || Sbjct 5140 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCGAGAGTT-CTCCCATCCTC 5198 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| || || ||| | || || ||||| || || || || | ||||| || || Sbjct 5199 AAGCTGCTTTCCAGCGAAGATAAGCCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTG 5258 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| ||||| | || | ||||| | | || || || | |||||| | ||| Sbjct 5259 AATCTTGGCTTTCACATTGTCAATGGTGTCCGAGCTCTCCACCTCCAAAGTTATGGTTTT 5318 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || ||||| ||||||||||||||| || Sbjct 5319 TCCAGTGAGGGTTTTGACAAAGATTTGCATACCT 5352 >seq86116 Length=13258 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| |||||| |||| || || || || || || |||||||| Sbjct 2705 TGCCCCCACGCAGACGCAGTACCAAGTGTAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 2764 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | | | |||| || ||||| || || || | || | ||||| || || || | Sbjct 2765 CAAGGGTCCTCCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCTGGGG 2824 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| ||||| |||||| || | | || | || || | | ||||| Sbjct 2825 GGATACCCTCCTTATCTTGGATCTTCGCCTTAACATTGTCGATGGTATCCGAGCTTTCAA 2884 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || || | ||| || |||| || ||||||||||||||||| Sbjct 2885 CTTCAAGGGTGATGGTTTTCCCAGTCAAGGTCTTCACAAAGATTTGCAT 2933 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | || || ||||| ||||| ||||| || | | |||| | ||||| Sbjct 3637 ACCAAATGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGCAAGGGTGCGACCATCTTCA 3696 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | || || | || || || || || | |||||| || || | Sbjct 3697 AGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGAGGGATACCCTCCTTGTCTTGG 3756 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | ||||| | | ||| || || || || |||| ||| Sbjct 3757 ATCTTGGCCTTGACATTATCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTTTTT 3816 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||||||||||||||| ||||| Sbjct 3817 CCGGTAAGAGTTTTCACAAAGATCTGCAT 3845 >seq109654 Length=28343 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | |||||||| | || || || || || || ||||||||| Sbjct 18194 CCTCCACGGAGACGAAGCACCAAATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCA 18253 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| ||||||||||| || ||| | ||||||||||| || || || || Sbjct 18254 AGGGTACGGCCGTCCTCGAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGA 18313 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||| ||| || | | | || | ||||| | | || || Sbjct 18314 ATTCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATTGTGTCGGAGCTCTCGACC 18373 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | || || || || ||||||||||| || |||||| Sbjct 18374 TCAAGGGTGATGGTCTTCCCGGTGAGGGTTTTCACAAATATCTGCATA 18421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424248321633312