Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq100138 167 2e-36 >seq100138 Length=20549 Score = 167 bits (184), Expect = 2e-36 Identities = 198/266 (74%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 58077 GCACGCTACAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAA 58136 |||| || || ||||| | ||| || || || ||||| ||||| ||||||||||| | Sbjct 12474 GCACCCTGCAACTGATCCACGAAGGTGGTTGCAAGGCGGGCCTGGTGTTCAACCCGGCCA 12533 Query 58137 CGCCGCTCAGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCG 58196 | ||| | || || || ||||| |||||||| | || |||||||||||||| || Sbjct 12534 CTCCGTTGAGCGTGCTTGAGTACGTGATGGACAAGGTCGACATGATCCTGCTGATGAGCG 12593 Query 58197 TGAACCCAGGCTTCGGCGGCCAGTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAG 58256 | ||||| ||||||||||||||| || || ||| |||||| | || ||||| |||| Sbjct 12594 TCAACCCGGGCTTCGGCGGCCAGAAGTTCATCCCGGGTACGCTGAACAAGCTGCGTGAAG 12653 Query 58257 TGCGT-CGCCGCATTGATGCGTCCGGTTACGACATTCGCCTGGAAGTGGACGGCGGCGTG 58315 ||| ||| | || ||||| || || ||||| ||||||||| | |||||||| || Sbjct 12654 CCCGTGCGCTG-ATCGATGCTTCGGGCCGTGACATCCGCCTGGAAATCGACGGCGGGGTC 12712 Query 58316 AAGGTGAACAATATCGGCGAGATCGC 58341 || || ||||||||| | || ||||| Sbjct 12713 AACGTCAACAATATCCGTGAAATCGC 12738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470461247472480