Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq101633 116 5e-21 seq124973 100 4e-16 seq26752 98.7 1e-15 seq128333 89.7 6e-13 seq109206 89.7 6e-13 >seq101633 Length=21634 Score = 116 bits (128), Expect = 5e-21 Identities = 225/332 (68%), Gaps = 0/332 (0%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | |||||||| |||||||| | ||||| || | | ||||| Sbjct 10966 TCAAGAATGTCAGCTCTGTTAGTGGCAGCAATAACAATGATGCCGGTGTTACCTTCAAAA 10907 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | || |||| || |||||||| ||||||||| || | | Sbjct 10906 CCATCCATTTCTGTTAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCCCCCA 10847 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 |||| || | || | ||||| |||||||| ||||||| || ||||| || ||| Sbjct 10846 ATTCCAGTACCTCTCTGTCTTCCCACAGCATCAATTTCATCAACAAATACAATGCAAGGT 10787 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 ||| || ||| ||| || ||||| || || | ||||| || ||||||||| Sbjct 10786 GCATTCTCCTTGGCCTTTTTGAAAAGATCACGTACTCGAGAAGCACCAACTCCAACAAAC 10727 Query 11723 ATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATG 11782 || || ||||| | | | ||| || ||||| ||| | |||||| || || Sbjct 10726 ATTTCAACAAACTCAGAACCCGAGATGGAGAAAAATGGAACACCAGCTTCACCAGCAATT 10667 Query 11783 GCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||| || || || |||||||| || || || Sbjct 10666 GCTTTAGCTAGCAGAGTCTTTCCAGTTCCAGG 10635 >seq124973 Length=53790 Score = 100 bits (110), Expect = 4e-16 Identities = 190/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || || ||||| || || |||||||||||||| | Sbjct 43347 AAACCCATCCATCTCTGTCAATAGCTGGTTAATGGTCTGCTCTCTCTCATCATTCCCACC 43406 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | |||||| | | ||| | || || |||||||| ||||| || || ||||| || Sbjct 43407 TCCAAGACCAGCCCCTCTTTGTCTCCCAACTGCATCAATTTCATCTATAAACACAATGCA 43466 Query 11659 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 || || |||| | ||| | ||||| | ||| || || | ||||| || |||| Sbjct 43467 -GGGTGCTTTTGACTTGGCCTTCTCAAACAAATCCCGGACTCGAGACGCACCAACTCCAA 43525 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 |||||| |||||||| | || || | || || || || || | |||||| | Sbjct 43526 CAAACAATTCCACAAACTCTGAAGCTGCACAAGAGAAAAACGGCACGCCAGCTTCACCAG 43585 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | | ||||| || | ||||||||||| ||||| || Sbjct 43586 CCACTGCTCGAGCCAAAAGGGTCTTTCCAGTACCAGG 43622 >seq26752 Length=1779 Score = 98.7 bits (108), Expect = 1e-15 Identities = 175/251 (70%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 111836 CCAATACCCCCAGCCCACTTTGAGAT--TTGCGCACACTCCGTAAGAGTTCCATAGATAC 111893 |||||||| ||||| ||| ||||| | ||||| | | | ||||| | ||||||| Sbjct 142 CCAATACCACCAGCGTTCTTGGAGATCATGGCGCAGAT--CTTGAGAGTATCGTAGATAC 199 Query 111894 CGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG 111953 | | || ||| ||||| || |||| ||||||||| | || ||| | || | Sbjct 200 CCTCAATGCTGTCATCCTTCATGTCGATGAGGAAGCAAGACGCCAGCTGTGCCTGAGGGG 259 Query 111954 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCG 112012 |||| || ||||||| || || | || || |||| ||| | | |||||| | || | Sbjct 260 TACCTGCGCTGAAGAGCGTAGGGGAGGCATGTGTGAAG-TACTTGTTGGACATGTAGTTG 318 Query 112013 TATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAAC 112072 || ||||| | | | || ||||| || ||||||||||||| || || ||||||| | Sbjct 319 TAGGTCTCGATTGCGGCCTCGATGTCGTCGCCGTGGATGCCGACAGCAACACGCATGATC 378 Query 112073 ATGTACTGTGG 112083 |||| |||||| Sbjct 379 ATGTGCTGTGG 389 >seq128333 Length=65618 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || |||||||| |||| |||||||||||| || | || ||| ||||| | || Sbjct 22938 CTGAGGCCTTGGTGTTCCAGAATTGAAGAGGGTGGGAGAAGCATGAGTGAACCACCGCTG 22997 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| ||| ||||||| | |||| |||| || ||| ||| || || | || Sbjct 22998 AGACATCATGTGATATGTCTTGATAGCAGATTCAACATCCTCCTTGTGAATTCCAACAGC 23057 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 112117 |||| ||| ||||||| || || |||| || | | || | | | || |||| Sbjct 23058 AACCCTCATCAACATGTGTTGCGGTCTTTCAATAACTTTTCCTTGTA--CCTTCAAGAGG 23115 Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 || | ||||||||||||||| ||||| ||| || | ||| | || || Sbjct 23116 TATGACCTCTCAAGGGTTTTGAAGCCAAAATAATCATAGTCAAAATCACG 23165 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTT--ATCTG 111278 ||| || ||| || || ||||||||||||||||| ||||| || || | || | || Sbjct 21679 ACAAACCGTGGTAGAGCAATTGATGCCAAATTGCACACAGCAGTTTC--CGTTGGACTTG 21736 Query 111279 TGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 111338 ||||||| | || |||||||| ||||| ||| || || || |||| || | ||| | Sbjct 21737 TGTACTCAATTATCTCTGTACACAAGTTCGAAGATTTTATGGTGCCCAGGTTTTGTTGAT 21796 Query 111339 TACTCTTCTTGTTGCACGCATCCT 111362 |||| ||| ||||||| | ||||| Sbjct 21797 TACTTTTCCTGTTGCAAGTATCCT 21820 >seq109206 Length=27697 Score = 89.7 bits (98), Expect = 6e-13 Identities = 174/257 (68%), Gaps = 9/257 (4%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || |||||||| || || | || || ||||| ||||| ||||| | || || ||| Sbjct 8030 CCTTCATCTCGCGATATCAACTCGTTAGAGAACGTGAGACCCGGCATCAACCCGCGTTTC 8089 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | |||| | || |||||||| |||||||||||||| ||||| || || || ||| Sbjct 8090 TTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCGACGCAGGCGAAC 8149 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG---CATCAAACCATTTCATTGCCCAT 122853 || | | || || ||||| ||| | || | || | ||| |||| ||||| Sbjct 8150 GCGATCAACCGCTCCGCGAA------AGATTCTGAGCCGTCGATCCACCTCATGGCCCAC 8203 Query 122854 TTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCA 122913 | |||||||| | | ||| || | || | |||||| | ||| | | ||||| ||| Sbjct 8204 TGAGCCTTCTTGGCCACACAAGGAATGGTCTCGATGGCGTGAAAGAGGCGGTTCTTCTCA 8263 Query 122914 GATCCATCCTTAATGTA 122930 | || |||||||| Sbjct 8264 GCCGGGTCTTTAATGTA 8280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626992010409600