Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq63231 116 5e-21 seq124973 100 4e-16 seq109206 100 4e-16 seq26752 98.7 1e-15 >seq63231 Length=5017 Score = 116 bits (128), Expect = 5e-21 Identities = 227/326 (70%), Gaps = 16/326 (5%) Strand=Plus/Plus Query 14110 GCGGTTCGTCGCCGCGATGACAACGATGCC--CGTCTCGTTATCAAAGCCATCCATCTCA 14167 |||||| || ||||| ||||| | |||||| ||| || || || ||||| ||||||||| Sbjct 3609 GCGGTTGGTTGCCGCAATGACGATGATGCCATCGT-TCATT-TCGAAGCCGTCCATCTCA 3666 Query 14168 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCAC 14225 || ||||| || | ||| || || || ||||||| | || ||| ||||| | Sbjct 3667 ACCAGCAGTTGGTTAAGGGTCTGCTCACGCTCATCATGACC--GCCACCCATGCCCGCGC 3724 Query 14226 TGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGT---TGATTTT 14282 || || || || ||||| |||||||||||||| | ||| ||||| || |||| Sbjct 3725 CACGATGGCGGCCAACTGCGTCGATTTCATCGATGAAGATGATGCATGGCGCATGCTTTT 3784 Query 14283 CACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCA 14342 | || ||| || ||||| || || | ||||||||||||| |||||||| || | Sbjct 3785 TA---GCCTGTTCGAACATATCGCGAACACGGCTGGCACCGACACCGACAAACATTTCGA 3841 Query 14343 CAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGG 14401 | |||| | | ||||| || | || ||| || || || | ||| || || || || | Sbjct 3842 CGAAATCAGAGCCGGAA-ATGGTGAAGAAAGGCACCTTGGCTTCGCCGGCAATCGCCTTG 3900 Query 14402 GCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || | ||| || || || || || Sbjct 3901 GCCAGCAAGGTTTTACCGGTACCCGG 3926 >seq124973 Length=53790 Score = 100 bits (110), Expect = 4e-16 Identities = 216/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||| ||||| || || || ||||| || || | ||||||||| || Sbjct 43347 AAACCCATCCATCTCTGTCAATAGCTGGTTAATGGTCTGCTCTCTCTCATCATTCCCACC 43406 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | ||| || | | ||| | || || || ||||||||||| || || || || || Sbjct 43407 TCCAAGACCAGCCCCTCTTTGTCTCCCAACTGCATCAATTTCATCTATAAACACAATGCA 43466 Query 14272 TGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 || || |||| || ||| ||||| | ||| || |||| ||||| || || | Sbjct 43467 -GGGTGCTTTTGACTTGGCCTTCTCAAACAAATCCCGGACTCGAGACGCACCAACTCCAA 43525 Query 14331 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCG 14390 |||||| |||||||| | | || | ||| || || || ||| || |||||| | Sbjct 43526 CAAACAATTCCACAAACTCTGAAGCTGCACAAGAGAAAAACGGCACGCCAGCTTCACCAG 43585 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCAC 14450 | | ||||| || | |||||||| || || || ||| || | |||| | |||| | Sbjct 43586 CCACTGCTCGAGCCAAAAGGGTCTTTCCAGTACCAGGTGGTCCAACAAGAA-GACACCCC 43644 Query 14451 -GTGGGATCCTGGCACCA 14467 ||||||| | || ||| Sbjct 43645 TTTGGGATCTTAGCTCCA 43662 >seq109206 Length=27697 Score = 100 bits (110), Expect = 4e-16 Identities = 371/567 (65%), Gaps = 17/567 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCCA 129785 || || ||||||| |||||| |||||||| ||||| || | ||| ||||| ||||| Sbjct 7724 TACTCTCCAACCCTCTTCTCAAAGAAGTTGGTCTTACCCTGCAAC--GATATCAGCTCCA 7781 Query 129786 TAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGC--ACTCCAATCTGTTTGAGGAG 129843 | ||||||| ||||||| | || | || |||| | |||| | | | | Sbjct 7782 TCCAATCAAAGGGGTTCTGGGCATTGTAGATCT-TGGCGTAACCCAA-CGCATCCATCAA 7839 Query 129844 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT 129903 ||||| | ||| |||| || |||| |||| || ||||||||| | | Sbjct 7840 TCGATCAGCCACGAACTCGATATACTTGCACATAAGATCACCGTTCATACCCACCAACGC 7899 Query 129904 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 ||| || || || || ||| |||| || |||| || || || || || || | ||| | Sbjct 7900 ACAAGGCAGAGCATCACAGACGAACTCCCTCTCGATATCAACGGCATCGCGGATGATTCC 7959 Query 129964 G-TGAATGGTCTCCGTGC-CAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CACGGCAAA 130020 ||| | | |||| || ||| | | || || | | || | || |||| ||| Sbjct 7960 CCTGACTCG-CTCCTCGCTCAGCT-TCTTCTTCAGAAGCGTGTAAAGCAAACACGCGAAA 8017 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || ||| | || || || || || || | || || ||||| ||||| ||||| Sbjct 8018 -TCGCAGTGTAACCCTTCATCTCGCGATATCAACTCGTTAGAGAACGTGAGACCCGGCAT 8076 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 | || || ||||| | ||| || ||||| || || || ||||||||||||||||| Sbjct 8077 CAACCCGCGTTTCTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTC 8136 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTT 130200 || || |||||||| | | ||||| || || || || || | |||| | Sbjct 8137 GACGCAGGCGAACGCGATCAACCGCTCCGCGAAAGATTCTGA---GCCGTCGATCCACCT 8193 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTC 130260 ||| |||||||| ||||| || | | ||| || | ||||| ||| || | |||||| Sbjct 8194 CATGGCCCACTGAGCCTTCTTGGCCACACAAGGAATGGTCTCGATGGCGTGAAAGAGGCG 8253 Query 130261 CTTCTTTTCTGATGGATCTTTGATGTA 130287 ||||| || | || ||||| ||||| Sbjct 8254 GTTCTTCTCAGCCGGGTCTTTAATGTA 8280 >seq26752 Length=1779 Score = 98.7 bits (108), Expect = 1e-15 Identities = 247/370 (67%), Gaps = 4/370 (1%) Strand=Plus/Plus Query 119191 CCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGG 119250 |||||| || || | || ||| ||| | ||||||||||| || | || ||| | || Sbjct 23 CCTGGTCGACGTAGCGAGCGGTGTTGTTGTAGACACGAAGCATGGGCACGAGACCGTTGG 82 Query 119251 ATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATAC 119310 | |||||| || || | ||| || | |||| | | ||| ||| | || Sbjct 83 AAGTGCCATTGGTGCCACCAATGTAAGCGCCAGTGGCACGAATGCGGTGAGTGTTGAGAC 142 Query 119311 CAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCAT 119370 ||||||| || || ||| ||||| ||||| | ||||| | ||||||| || | Sbjct 143 CAATACCACCAGCGTTCTTGGAGATCATGGCGCAGATCTTGAGAGTATCGTAGATACCCT 202 Query 119371 CGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTA 119429 | || |||| |||| | ||||||||||||| || || || ||||| || ||| Sbjct 203 CAATGCTGTCATCCTTCATGTCGATGAGGAAGCAAGACGCCAGCTG-TGCCTGAGGGGTA 261 Query 119430 CCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTA 119488 || ||| ||||||| || || | || || |||| ||| | | |||||| | || ||| Sbjct 262 CCTGCGCTGAAGAGCGTAGGGGAGGCATGTGTGAA-GTACTTGTTGGACATGTAGTTGTA 320 Query 119489 GGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548 |||||| | |||| ||||| || ||||| || |||| | || ||||| | ||| Sbjct 321 GGTCTCGATTGCGGCCTCGATGTCGTCGCCGTGGATGCCGACAGCAACACGCATGATCAT 380 Query 119549 GTATTGGGGT 119558 || || ||| Sbjct 381 GTGCTGTGGT 390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617411102230560