Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq101633 125 8e-24 seq124973 120 4e-22 seq109206 105 8e-18 seq128333 86.0 7e-12 >seq101633 Length=21634 Score = 125 bits (138), Expect = 8e-24 Identities = 276/411 (67%), Gaps = 2/411 (0%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || ||| | | || || || || || |||| || || || | | |||||| Sbjct 10966 TCAAGAATGTCAGCTCTGTTAGTGGCAGCAATAACAATGATGCCGGTGTTACCTTCAAAA 10907 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||| ||||| ||||||| || ||||| | ||||||||| || | | Sbjct 10906 CCATCCATTTCTGTTAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCCCCCA 10847 Query 9677 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT 9736 |||| || | || ||||||| |||||||| ||||||| || || ||||| ||| Sbjct 10846 ATTCCAGTACCTCTCTGTCTTCCCACAGCATCAATTTCATCAACAAATACAATGCAAGGT 10787 Query 9737 TGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAAC 9796 ||| || || || || ||||| ||||| || || || || ||||||||| Sbjct 10786 GCATTCTCCTTGGCCTTTTTGAAAAGATCACGTACTCGAGAAGCACCAACTCCAACAAAC 10727 Query 9797 ATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT 9855 || || ||||| | | | | | || | || || || ||| || |||||| ||||| Sbjct 10726 ATTTCAACAAACTCAGAACCCG-AGATGGAGAAAAATGGAACACCAGCTTCACCAGCAAT 10668 Query 9856 GGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGG 9915 ||| || || |||||||| || || || || || | || || | ||| || Sbjct 10667 TGCTTTAGCTAGCAGAGTCTTTCCAGTTCCAGGGGGGCCAACAAGAAGAACTCCTTTAGG 10608 Query 9916 AATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 ||| || ||| | || | | || ||||||| ||| | ||| ||||| Sbjct 10607 AATGCGAGCCCCAACTGCAGTGAACCTTTCAGGTTTCTTCAAAAACTCCAC 10557 >seq124973 Length=53790 Score = 120 bits (132), Expect = 4e-22 Identities = 259/381 (68%), Gaps = 6/381 (2%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||||||||| || |||||||| || || || | ||||||||| | Sbjct 43347 AAACCCATCCATCTCTGTCAATAGCTGGTTAATGGTCTGCTCTCTCTCATCATTCCCACC 43406 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | |||||| | | ||| | || || |||||||| ||||| || || || ||||| Sbjct 43407 TCCAAGACCAGCCCCTCTTTGTCTCCCAACTGCATCAATTTCATCTATAAACACAATGCA 43466 Query 9733 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 || || |||| | | | || ||||| | |||||| || || || || || ||| Sbjct 43467 -GGGTGCTTTTGACTTG-GCCTTCTCAAACAAATCCCGGACTCGAGACGCACCAACTCCA 43524 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9850 ||||||| |||||||| | || || | ||| || || || || || |||||| Sbjct 43525 ACAAACAATTCCACAAACTCTGAAGCTGCACAAGAGAAAAACGGCACGCCAGCTTCACCA 43584 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 || | ||||| || | ||| ||||| || ||||| || | || | || | |||| Sbjct 43585 GCCACTGCTCGAGCCAAAAGGGTCTTTCCAGTACCAGG-TGGTCCAACAAGAAGACACCC 43643 Query 9911 C-GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 9969 | ||| ||||| || ||| | || ||| | || || | ||| | ||||| || | Sbjct 43644 CTTTGGGATCTTAGCTCCAAGTGCAGTGTACTTATCTGGGTTCTTCAAGAAATCAACCAC 43703 Query 9970 TTCTTCCAATTCATCTTTGGC 9990 |||| ||||||| ||| || Sbjct 43704 CTCTTGCAATTCAAGTTTTGC 43724 >seq109206 Length=27697 Score = 105 bits (116), Expect = 8e-18 Identities = 167/239 (70%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 94699 GCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCG 94758 ||||||||||| | |||||| | |||||| | || |||| ||| | ||||| || Sbjct 8265 GCTGAGAAGAACCGCCTCTTTCACGCCATCGAGACCATTCCTTGTGTGGCCAAGAAGGCT 8206 Query 94759 GATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCA 94818 | ||||| |||| |||| | || || || || || ||||| | |||| Sbjct 8205 CAGTGGGCCATGAGGTGGATCGACGGC---TCAGAATCTTTCGCGGAGCGGTTGATCGCG 8149 Query 94819 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAG 94878 || || || || ||||| ||||||||||| || ||||||||| || | |||||| ||| Sbjct 8148 TTCGCCTGCGTCGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATATTTTGGCTAAAG 8089 Query 94879 AAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 || || || | ||||| |||||| ||||| |||||| | || || || || || || Sbjct 8088 AAACGCGGGTTGATGCCGGGTCTCACGTTCTCTAACGAGTTGATATCGCGAGATGAAGG 8030 >seq128333 Length=65618 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 104147 GACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGCTCGATG 104204 |||| || ||||||||| ||||||||||||||| | || |||| || | | | | Sbjct 23156 GACTATGATTATTTTGGCTTCAAAACCCTTGAGAGGTCATACCTCTTGAAGG--TACAAG 23099 Query 104205 GTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGG 104264 | | || |||| || || ||||||| ||| | || || | || ||||| || Sbjct 23098 GAAAAGTTATTGAAAGACCGCAACACATGTTGATGAGGGTTGCTGTTGGAATTCACAAGG 23039 Query 104265 AAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACG 104324 | || |||| |||| | ||||||| ||| |||||| || | ||||| ||| | Sbjct 23038 AGGATGTTGAATCTGCTATCAAGACATATCACATGATGTCTCAGCGGTGGTTCACTCATG 22979 Query 104325 CAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 | | || |||||||||||| |||| |||||||| || || Sbjct 22978 CTTCTCCCACCCTCTTCAATTCTGGAACACCAAGGCCTCA 22939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582294949278240