Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq108749 107 9e-19 >seq108749 Length=27216 Score = 107 bits (118), Expect = 9e-19 Identities = 118/156 (76%), Gaps = 6/156 (4%) Strand=Plus/Minus Query 65087 CGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTC 65146 ||||| |||||||||||||||||| ||| | ||| || || || ||| | | ||| | Sbjct 1468 CGTGTGCCAAACTGACCATTTGGCTGTAAAAGATTGATGTTATTACTACCCACATAATCC 1409 Query 65147 TGAGCCATTCCGATAATTG---CTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAA 65203 || |||||||| || || | | ||| | |||||| ||||| || ||||| ||||| Sbjct 1408 TGTGCCATTCCAATGATGGTACCGGCA---AGACTCGCCTCACCATGGTGATAGGCTGAA 1352 Query 65204 TGTTCAGAGACATATCCACTAAATTGAGCAACTTTT 65239 |||||||| ||||| ||| ||| |||||||| ||| Sbjct 1351 TGTTCAGATACATAACCAGAAAACTGAGCAACCTTT 1316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235299482561400