Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq26752 149 7e-31 >seq26752 Length=1779 Score = 149 bits (164), Expect = 7e-31 Identities = 273/398 (69%), Gaps = 4/398 (1%) Strand=Plus/Plus Query 79521 GCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGG 79580 ||||||| ||| ||||||| |||||| || || ||||||||| | || || |||||||| Sbjct 9 GCGCTTGTTGCCTCCCTGGTCGACGTAGCGAGCGGTGTTGTTGTAGACACGAAGCATGGG 68 Query 79581 CACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTT 79640 ||||| |||| || ||| || || || || | || | || |||||| Sbjct 69 CACGAGACCGTTGGAAGTGCCATTGGTGCCACCAATGTAAGCGCCAGTGGCACGAATG-- 126 Query 79641 CGAGCAGTG--GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGC 79698 || |||| || || || || || | ||||||||| ||||| |||||| Sbjct 127 CGGTGAGTGTTGAGACCAATACCACCAGCGTTCTTGGAGATCATGGCGCAGATCTTGAGA 186 Query 79699 GTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATC 79758 || |||||||| ||||| || ||| |||||||| ||| |||||||| || || | Sbjct 187 GTATCGTAGATACCCTCAATGCTGTCATCCTTCATGTCGATGAGGAAGCAAGACGCCAGC 246 Query 79759 TGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGG 79818 |||| | ||||| ||| ||||||| || || | || || |||||| |||| | | Sbjct 247 TGTGCCTGAGGGGTACCTGCGCTGAAGAGCGTAGGGGAGGCATGTGTGAAGTACTTGTTG 306 Query 79819 CTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCG 79878 ||| | ||| ||||| | || | || ||||||||||||||||||||| || Sbjct 307 GACATGTAGTTGTAGGTCTCGATTGCGGCCTCGATGTCGTCGCCGTGGATGCCGACAGCA 366 Query 79879 ACGCGCATGAAGAGGTACTGGGGCGTCTCGCCGACATT 79916 || ||||||| | || ||| || ||||| | || || Sbjct 367 ACACGCATGATCATGTGCTGTGGTCTCTCGGCAACTTT 404 Score = 138 bits (152), Expect = 1e-27 Identities = 268/393 (68%), Gaps = 12/393 (3%) Strand=Plus/Minus Query 19097 GAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCG 19156 |||| || ||| || | ||||||| || || ||||||||||| ||||||||| || Sbjct 395 GAGAGACCACAGCACATGATCATGCGTGTTGCTGTCGGCATCCACGGCGACGACATC--- 339 Query 19157 CGAGTCCGC----GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCC 19212 ||| |||| ||||| ||| || ||| | | |||| |||||| || || | || Sbjct 338 -GAGGCCGCAATCGAGACCTACAACTACATGTCCAACAAGTACTTCACACATGCCTCCCC 280 Query 19213 GACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTAT 19272 || || |||| ||| ||||| | | ||| || || || ||||| | | || Sbjct 279 TACGCTCTTCAGCGCAGGTACCCCTCAGGCACAGCTGGCGTCTTGCTTCCTCATCGACAT 220 Query 19273 GAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAA 19332 ||||||||||||||||||||| |||||||| || |||||| ||||| |||||||| Sbjct 219 GAAGGATGACAGCATTGAGGGTATCTACGATACTCTCAAGATCTGCGCCATGATCTCCAA 160 Query 19333 GTGGTCCGGGGGTATCGGGATC--CACTGCTCGAATATCCGGTCGAGTGGTACACGAATC 19390 | | || ||||| || || |||| || || || | | ||| | || Sbjct 159 GAACGCTGGTGGTATTGGTCTCAACACTCACCG--CATTCGTGCCACTGGCGCTTACATT 102 Query 19391 AATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACG 19450 ||| || || || || ||||| |||| || ||||| || |||| ||||||||| Sbjct 101 GGTGGCACCAATGGCACTTCCAACGGTCTCGTGCCCATGCTTCGTGTCTACAACAACACC 42 Query 19451 GCCAGGTACGTCAACCAGGGGGGCGGCAAACGC 19483 || | |||||| ||||||| ||| ||| ||| Sbjct 41 GCTCGCTACGTCGACCAGGGAGGCAACAAGCGC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547616470357440