Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq98715 152 6e-32 seq26752 122 1e-22 seq109206 111 2e-19 seq24838 91.5 2e-13 seq111658 89.7 6e-13 seq11176 89.7 6e-13 seq130461 87.8 2e-12 seq131975 86.0 7e-12 seq128596 86.0 7e-12 seq125701 86.0 7e-12 seq125123 86.0 7e-12 seq121909 86.0 7e-12 seq49108 86.0 7e-12 seq103577 84.2 2e-11 seq113407 82.4 8e-11 seq108281 82.4 8e-11 >seq98715 Length=19641 Score = 152 bits (168), Expect = 6e-32 Identities = 365/547 (67%), Gaps = 5/547 (1%) Strand=Plus/Plus Query 158940 AATAAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGG 158999 ||| || ||||| | | || | | | || || || || || ||||| ||||| | Sbjct 12706 AATGAAGTCGCGCACGGAGTACTGCACGCCGGTGGCGATAACGAAGTCTTCTGGGGTGTC 12765 Query 159000 CTGTTGGAGCATGAGCCACATGGCCTCG-ACGTAATCCTGCGCGTGACCCCAGTCGCGCT 159058 |||||| ||||| | |||| || || ||||| |||| ||||| |||||||||||| Sbjct 12766 CTGTTGCAGCATCATCCAC-TGCATACGGACGTAGTCCTTGGCGTGGCCCCAGTCGCGCA 12824 Query 159059 TGGCATCCATGTTCCCGAGCTCGATG-ACTTTTCCAGACTTTTTCCACTCA--GCCAGAC 159115 ||||||||||| || | | || | ||| ||| || | || | | ||||| | Sbjct 12825 GCGCATCCATGTTGCCCATGTAGAGGCACTGTTCAAGGCCTTGGGCGATATTGGCCAGGC 12884 Query 159116 CGAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACA 159175 || | ||||||||||| ||||| ||| | | ||||| ||| |||||| ||||| || | Sbjct 12885 CGCGAGTGATCTTGCGGGTCACGAACGTTTCGCCGCGGCGTGGCGACTCGTGGTTGAAGA 12944 Query 159176 GAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATC 159235 | |||||| | || || || | ||||| |||||||| || |||||||| Sbjct 12945 GGATGCCGTTGCAGGCATGCATGCCATAGGCTTCGCGGTAGTTGACCACAATCCAGTAGG 13004 Query 159236 CAAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTGAA 159295 | | ||||| | ||| | ||||| || |||||||| ||||| || || || Sbjct 13005 CGTAAAGCTTTGCTACGGCATATGGCGAGCGCGGATAAAACGGTGTGGTTTCCTTCTGCG 13064 Query 159296 TTGGTTCCTGAACCTTTCCAAACATTTCACTCGTCCCAGCCTGATAAAATTTGAATTTAG 159355 | |||||| ||| || | | |||| ||| |||||| || || | || Sbjct 13065 GGGTTTCCTGCACCAGCCCGTAGAGTTCAGAGGTCGAAGCCTGGTAGAAACGGGTCTTTT 13124 Query 159356 AAACAAAATTGAATTGACGAATTGCTTCAAGAATTCGAAGGGTACCCATGGCGTCGACGT 159415 | | | || | || ||||| |||||||| || ||||| |||||||| || || | Sbjct 13125 TCTCGAGACCGAGCAGGCGGATTGCCTCAAGAATACGCAGGGTGCCCATGGCATCCACAT 13184 Query 159416 TCGCCGTGTACTCGGGCTGCTCAAAAGAGAGCTTCACGTGTGACTGGGCTCCGAGGTTAT 159475 || |||||||| ||| ||| || || ||||| ||||| || || ||||| | Sbjct 13185 CTGCGGTGTACTCCGGCGACTCGAAGCTGACGGCAACGTGGGACTGTGCGCCCAGGTTGT 13244 Query 159476 AGACCTC 159482 ||||||| Sbjct 13245 AGACCTC 13251 >seq26752 Length=1779 Score = 122 bits (134), Expect = 1e-22 Identities = 247/364 (68%), Gaps = 12/364 (3%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGT----GAGACG 53248 ||||||| || || | || |||||||| |||||| | | | ||| ||||| Sbjct 376 TCATGCGTGTTGCTGTCGGCATCCACGGCGACGACATC----GAGGCCGCAATCGAGACC 321 Query 53249 TACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGT 53308 ||| ||| ||| | | |||||||| || || ||| | || || || |||| ||| ||| Sbjct 320 TACAACTACATGTCCAACAAGTACTTCACACATGCCTCCCCTACGCTCTTCAGCGCAGGT 261 Query 53309 ACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGAC 53368 || ||| | ||| || || |||||||| | | |||||||||||| || || Sbjct 260 ACCCCTCAGGCACAGCTGGCGTCTTGCTTCCTCATCGACATGAAGGATGACAGCATTGAG 201 Query 53369 GGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGT 53428 || |||||||| || |||||| || ||| ||||||||| | |||||||| ||| Sbjct 200 GGTATCTACGATACTCTCAAGATCTGCGCCATGATCTCCAAGAACGCTGGTGGTATTGGT 141 Query 53429 ATC--CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCG 53486 || |||| || | | ||||| | ||| | || || || || ||| Sbjct 140 CTCAACACTCACCG--CATTCGTGCCACTGGCGCTTACATTGGTGGCACCAATGGCACTT 83 Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 || | || ||||||| ||||| || |||| ||||||||| || || |||||| |||||| Sbjct 82 CCAACGGTCTCGTGCCCATGCTTCGTGTCTACAACAACACCGCTCGCTACGTCGACCAGG 23 Query 53547 GTGG 53550 | || Sbjct 22 GAGG 19 >seq109206 Length=27697 Score = 111 bits (122), Expect = 2e-19 Identities = 280/417 (67%), Gaps = 14/417 (3%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 |||||||||| |||||| || || || |||| || || ||||| | || || ||| Sbjct 8030 CCTTCATCTCGCGATATCAACTCGTTAGAGAACGTGAGACCCGGCATCAACCCGCGTTTC 8089 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | |||||| || || |||||| || ||||||||| || ||||| || || || Sbjct 8090 TTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCGACGCAGGCGAAC 8149 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC-ATCCAAGTCTGAGCCCATTCAGC 74947 |||| | || | |||||| | | | | | ||| ||||| || ||||| | ||| Sbjct 8150 GCGATCAACCGCTCCGCGAAAGATTC-TGAGCCGTCGATCCACCTCATGGCCCACTGAGC 8208 Query 74948 TTTTCGTTTGACCGCA---GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTC 75004 || ||| || || || | || ||||| || || ||||||| |||||| | Sbjct 8209 CTTC---TTGGCCACACAAGGAATGGTCTCGATGGCGTGAAAGAGGCGGTTCTTCTCAGC 8265 Query 75005 GGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTT 75064 || || || | | | || | || || |||| |||| || ||||| |||| | Sbjct 8266 CGGGTCTTTAATGTAAGTCTCCAACAAGAGACTGTACATCTCAGAGTGAATATTCTCGAT 8325 Query 75065 GAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAA 75121 | ||| |||| || | || || | |||||||| || | || | ||||| |||| Sbjct 8326 -AGCGATCTGGAACCCATAAAAGGCACGCGCCTCCGCGACTTGAATCTCCTTCATGAACC 8384 Query 75122 ATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTAC 75178 | | | ||| |||||||| ||||||||||| |||||||| || ||||| || || Sbjct 8385 TTCC--GGCGAGATTCTCCAAAACGATGCCGTCTGAGGCGGCAAAGAAAGCAAGAAC 8439 >seq24838 Length=1589 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/218 (69%), Gaps = 9/218 (4%) Strand=Plus/Plus Query 124518 CCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCACATGGCTTGG 124577 || ||| | |||||| |||| || || |||||||| ||| |||||||| || || Sbjct 1375 CCGGTGGCGATCACGTAATCGTCCGGGCGGTCCTGCTGCAGCATCAGCCACATCGCCTGC 1434 Query 124578 ACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGC------TCG 124631 |||||||| ||||| ||||||||||||||||| || | ||| |||||| || Sbjct 1435 ACGTAGTCGCGGGCGTGGCCCCAGTCGCGCTTGGCGTCGATGTTGCCGAGCCGCAGCTCC 1494 Query 124632 ATTGGCTTGGCCGTCTTGTTCCACTCCGCCAAACCCAGTGTAATCTTGCGCGTCACAAAC 124691 | || || | |||| ||| | || || || || | |||||| ||||| ||| Sbjct 1495 TTCTGCGTGCCGAGCTTGATCCGCGCCACCGCGTCC---GTGACCTTGCGGGTCACGAAC 1551 Query 124692 TCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAAT 124729 ||| ||||| || ||||||||||||||| || Sbjct 1552 TCGACCCCGCGCAGCGGGCTCTCGTGGTTGAACAGGAT 1589 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 158968 CCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCACATGGCCTCG 159027 || || || ||||| | || || || | | ||| || ||||| |||||||| |||| Sbjct 1375 CCGGTGGCGATCACGTAATCGTCCGGGCGGTCCTGCTGCAGCATCAGCCACATCGCCTGC 1434 Query 159028 ACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAGC 159078 ||||| || | ||||| ||||||||||||||||| || ||||| |||||| Sbjct 1435 ACGTAGTCGCGGGCGTGGCCCCAGTCGCGCTTGGCGTCGATGTTGCCGAGC 1485 >seq111658 Length=30165 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 15519 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 15460 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 15459 TGAGCTACGAAAGC 15446 >seq11176 Length=1143 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| |||| |||| ||||||||||||||||||||||| ||| |||| Sbjct 751 ACTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGATCTAACCA 810 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||||||| Sbjct 811 ACTGAGCTACGAAAGC 826 >seq130461 Length=122529 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| ||||||| |||| |||| |||| ||||||||||||||||||||||||||| || Sbjct 115140 AGATTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 115199 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| ||||||| |||||| Sbjct 115200 CAACTGAGCTATGAAAGC 115217 >seq131975 Length=110254 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 92159 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 92218 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 92219 TGAGCTATGAAAGC 92232 >seq128596 Length=66530 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 33103 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 33162 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 33163 TGAGCTATGAAAGC 33176 >seq125701 Length=54882 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 7713 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 7772 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 7773 TGAGCTATGAAAGC 7786 >seq125123 Length=53006 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 13367 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 13308 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 13307 TGAGCTATGAAAGC 13294 >seq121909 Length=45044 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 35829 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 35888 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 35889 TGAGCTATGAAAGC 35902 >seq49108 Length=3062 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1000 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 941 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 940 TGAGCTATGAAAGC 927 >seq103577 Length=22962 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| | || |||| ||||||||||||||||||||||||||| |||| Sbjct 21156 ACTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 21097 Query 79682 ATTGAGCTACGAAAGC 79697 | ||||||| |||||| Sbjct 21096 ACTGAGCTATGAAAGC 21081 >seq113407 Length=31995 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 27233 CTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 27292 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 27293 CTGAGCTACGAGAGC 27307 >seq108281 Length=26817 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 4480 CTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 4421 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 4420 CTGAGCTACGAGAGC 4406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546309837664800