Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_028667.1 Length=39593 Score E Sequences producing significant alignments: (Bits) Value seq124742 111 4e-20 >seq124742 Length=51505 Score = 111 bits (122), Expect = 4e-20 Identities = 126/165 (76%), Gaps = 3/165 (2%) Strand=Plus/Plus Query 28202 ATGCAGGAGGCGACTGGTAAGGCCGTTTCTGAAACCGTGGCCGAGTTCTCCAAGCTGGCC 28261 |||||||| || || || ||||| || || ||||| ||||| |||||||| ||||| Sbjct 24006 ATGCAGGAAGCCACCGGCAAGGCAGTAAGCGAGACCGTCGCCGAATTCTCCAAACTGGCA 24065 Query 28262 GATGATCCGGTCAAGGCGTC-GCAGCAGCTCAATGACCGCTATCACTACCTGACGGCCTC 28320 || || ||||| ||| | || || || ||| ||||| | || ||||||||||||||||| Sbjct 24066 GACGACCCGGTAAAGTCCTCTGCTGC-GCTGAATGAGCAGTACCACTACCTGACGGCCTC 24124 Query 28321 GGTGTACGAGCAGATCACTGCCCTGGAGAGGCAGGGGGA-CACGC 28364 ||| ||| ||| ||| | || |||||| ||||| || ||||| Sbjct 24125 GGTTTACTCGCAAATCGCGGCACTGGAGCAACAGGGCGACCACGC 24169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126376876649160