Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_028695.2 Length=40491 Score E Sequences producing significant alignments: (Bits) Value seq124742 127 5e-25 >seq124742 Length=51505 Score = 127 bits (140), Expect = 5e-25 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 6810 CTGCCGGAGGATTATGTCGACTCCCTACGCGCGACGTATCCGGAACAGCTTATCGACGCA 6869 |||||||| || || ||| ||| || | | |||||||| ||| | ||| || Sbjct 12750 CTGCCGGATGACTACATCGCCTCGCTGATGGAGTCGTATCCGCCTCAGTTGATCATGGCG 12809 Query 6870 TACATCGATGGTGAGTTTGTTAACCTGACGTCCGGTACGGTCTACTACGCGTACAAGCGC 6929 ||| || | || |||| || |||||||||||||| ||| ||||| ||| ||| | ||| Sbjct 12810 TACCTCAAGGGCCAGTTCGTCAACCTGACGTCCGGCACGATCTACACCGCCTACGACCGC 12869 Query 6930 CAGCGCAACGGCAGCCGGGAGACCATCCAGCCGGGCGAAACGCTCTACATCGGCCAGGAC 6989 ||| ||||| || || ||| | ||||| ||||| |||| | ||||||| |||| Sbjct 12870 AAGCTAAACGGATGCTTCGACACCGTGCAGCCTGGCGAGCCGCTGTTCATCGGCATGGAC 12929 Query 6990 TTCAACGTCGGCAAGATGGCTACGA 7014 ||||||||||||||||||||| ||| Sbjct 12930 TTCAACGTCGGCAAGATGGCTGCGA 12954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129245956038136