Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_028785.1 Length=72790 Score E Sequences producing significant alignments: (Bits) Value seq98467 284 6e-72 seq43102 158 6e-34 >seq98467 Length=19475 Score = 284 bits (314), Expect = 6e-72 Identities = 520/759 (69%), Gaps = 7/759 (1%) Strand=Plus/Plus Query 64061 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 64120 ||| |||| |||||| | | ||||||| ||| || ||||| || || || | ||| Sbjct 12095 ATTTCCACGGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGC 12154 Query 64121 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 64180 || | || ||||||||||| || |||||||| || || | || ||| || | | Sbjct 12155 CGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTG 12214 Query 64181 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 64240 | ||| | |||||||| || | || | || | | ||||||| |||||| ||||| Sbjct 12215 ATTGCCCAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTG 12274 Query 64241 GACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGC 64298 ||||||||||||||| ||| | || || || | ||| |||| |||| |||| Sbjct 12275 GACCCTGAGTACGCC--GGCAAATTGGGCGTCAACGTTGACGACCTGCTGGTTTCCCAGC 12332 Query 64299 CGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGT 64358 ||||||| || ||||| |||||||| ||| ||| | || || || || | Sbjct 12333 CGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCG 12392 Query 64359 CCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACA 64418 | | |||| || ||||| ||||| ||||||||||| || || |||||||||| | Sbjct 12393 ACGTGATCGTGGTCGACTCCGTGGCCGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAA 12452 Query 64419 TCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCA 64478 | || |||| ||||| |||||||| || || || ||||| ||||| |||| || ||| Sbjct 12453 TGGGTGACATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCA 12512 Query 64479 CCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGA 64538 |||| | |||| | | ||||| ||| | ||| |||||||| | || ||||| Sbjct 12513 CCGGTAACATCAAGAACGCCAACTGCCTGGTGATCTTCATCAACCAGATCCGTATGAAGA 12572 Query 64539 TCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCT 64598 ||||| || | | ||||| || |||||||| || || || || ||| ||||| Sbjct 12573 TCGGCGTGATGTTCGGCAGCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCT 12629 Query 64599 ACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTG 64658 |||| || ||||| |||| |||| || | || | | | ||| ||||| || |||| || Sbjct 12630 ACGCTTCGGTCCGTTTGGACATCCGCCGTACCGGCGCGGTGAAAGAAGGTGACGAGGTTG 12689 Query 64659 TCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACG 64718 | || | ||||| || || ||||| |||||||| |||||||||| |||| | | Sbjct 12690 TAGGTAGTGAAACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCCCCGCCTTTCCGCCAGG 12749 Query 64719 CCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGG 64778 |||||||| | | ||||| ||||||||| | | | ||| | ||||||||| Sbjct 12750 CCGAGTTCCAGATTCTCTACGGCAAGGGCATCTACCTGAACGGCGAGATGATCGACCTGG 12809 Query 64779 CCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT 64817 ||| ||| || | || |||| || || || |||| Sbjct 12810 GTGTGCTGCACGGTTTCGTCGAGAAATCCGGTGCATGGT 12848 >seq43102 Length=2767 Score = 158 bits (174), Expect = 6e-34 Identities = 219/305 (72%), Gaps = 9/305 (3%) Strand=Plus/Minus Query 64518 TCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGG 64577 |||||||| | || |||||||||| ||| |||||| |||||||||||||| Sbjct 854 TCAACCAGATCCGGATGAAGATCGGC---GTGATGTACGGCAGCCCCGAGACCACCACGG 798 Query 64578 GCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCG 64637 ||||||| || ||| |||||||||||| || ||| | || | || |||||| | ||| Sbjct 797 GCGGCAACGCCCTGAAGTTCTACGCCTCGGTGCGCCTCGACATACGCCGCATCTCGACCC 738 Query 64638 AGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGC 64697 |||||| |||| ||||| ||||||||| ||| || ||||| || ||||||||| Sbjct 737 TGAAGGATCGCGACGAGGCGATCGGCAACCAGGTCCGCGTCAAGGTGGTGAAGAACAAGG 678 Query 64698 TGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTG 64757 | || |||||| | | | ||||||| | || ||| ||| |||||| | ||| Sbjct 677 TCGCGCCGCCGTTCAAGCAGGTCGAGTTCGACATCATGTTCGGCGAGGGCGTGTCGA--- 621 Query 64758 AGGTCG---AACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCT 64814 |||||| | || ||||||| | |||| | ||| | || ||||||| ||||||| Sbjct 620 AGGTCGGTGAGCTGATCGACCTCGGCGTGAAGGCTGGCATCGTCGAGAAGTCAGGCGCCT 561 Query 64815 GGTTC 64819 ||||| Sbjct 560 GGTTC 556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232427327302436