Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= NC_028785.1
Length=72790
Score E
Sequences producing significant alignments: (Bits) Value
seq98467 284 6e-72
seq43102 158 6e-34
>seq98467
Length=19475
Score = 284 bits (314), Expect = 6e-72
Identities = 520/759 (69%), Gaps = 7/759 (1%)
Strand=Plus/Plus
Query 64061 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 64120
||| |||| |||||| | | ||||||| ||| || ||||| || || || | |||
Sbjct 12095 ATTTCCACGGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGC 12154
Query 64121 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 64180
|| | || ||||||||||| || |||||||| || || | || ||| || | |
Sbjct 12155 CGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTG 12214
Query 64181 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 64240
| ||| | |||||||| || | || | || | | ||||||| |||||| |||||
Sbjct 12215 ATTGCCCAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTG 12274
Query 64241 GACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGC 64298
||||||||||||||| ||| | || || || | ||| |||| |||| ||||
Sbjct 12275 GACCCTGAGTACGCC--GGCAAATTGGGCGTCAACGTTGACGACCTGCTGGTTTCCCAGC 12332
Query 64299 CGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGT 64358
||||||| || ||||| |||||||| ||| ||| | || || || || |
Sbjct 12333 CGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCG 12392
Query 64359 CCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACA 64418
| | |||| || ||||| ||||| ||||||||||| || || |||||||||| |
Sbjct 12393 ACGTGATCGTGGTCGACTCCGTGGCCGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAA 12452
Query 64419 TCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCA 64478
| || |||| ||||| |||||||| || || || ||||| ||||| |||| || |||
Sbjct 12453 TGGGTGACATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCA 12512
Query 64479 CCGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGA 64538
|||| | |||| | | ||||| ||| | ||| |||||||| | || |||||
Sbjct 12513 CCGGTAACATCAAGAACGCCAACTGCCTGGTGATCTTCATCAACCAGATCCGTATGAAGA 12572
Query 64539 TCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCT 64598
||||| || | | ||||| || |||||||| || || || || ||| |||||
Sbjct 12573 TCGGCGTGATGTTCGGCAGCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCT 12629
Query 64599 ACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTG 64658
|||| || ||||| |||| |||| || | || | | | ||| ||||| || |||| ||
Sbjct 12630 ACGCTTCGGTCCGTTTGGACATCCGCCGTACCGGCGCGGTGAAAGAAGGTGACGAGGTTG 12689
Query 64659 TCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACG 64718
| || | ||||| || || ||||| |||||||| |||||||||| |||| | |
Sbjct 12690 TAGGTAGTGAAACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCCCCGCCTTTCCGCCAGG 12749
Query 64719 CCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGG 64778
|||||||| | | ||||| ||||||||| | | | ||| | |||||||||
Sbjct 12750 CCGAGTTCCAGATTCTCTACGGCAAGGGCATCTACCTGAACGGCGAGATGATCGACCTGG 12809
Query 64779 CCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT 64817
||| ||| || | || |||| || || || ||||
Sbjct 12810 GTGTGCTGCACGGTTTCGTCGAGAAATCCGGTGCATGGT 12848
>seq43102
Length=2767
Score = 158 bits (174), Expect = 6e-34
Identities = 219/305 (72%), Gaps = 9/305 (3%)
Strand=Plus/Minus
Query 64518 TCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGG 64577
|||||||| | || |||||||||| ||| |||||| ||||||||||||||
Sbjct 854 TCAACCAGATCCGGATGAAGATCGGC---GTGATGTACGGCAGCCCCGAGACCACCACGG 798
Query 64578 GCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCG 64637
||||||| || ||| |||||||||||| || ||| | || | || |||||| | |||
Sbjct 797 GCGGCAACGCCCTGAAGTTCTACGCCTCGGTGCGCCTCGACATACGCCGCATCTCGACCC 738
Query 64638 AGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGC 64697
|||||| |||| ||||| ||||||||| ||| || ||||| || |||||||||
Sbjct 737 TGAAGGATCGCGACGAGGCGATCGGCAACCAGGTCCGCGTCAAGGTGGTGAAGAACAAGG 678
Query 64698 TGGCCCCGCCGCACCGCAACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTG 64757
| || |||||| | | | ||||||| | || ||| ||| |||||| | |||
Sbjct 677 TCGCGCCGCCGTTCAAGCAGGTCGAGTTCGACATCATGTTCGGCGAGGGCGTGTCGA--- 621
Query 64758 AGGTCG---AACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCT 64814
|||||| | || ||||||| | |||| | ||| | || ||||||| |||||||
Sbjct 620 AGGTCGGTGAGCTGATCGACCTCGGCGTGAAGGCTGGCATCGTCGAGAAGTCAGGCGCCT 561
Query 64815 GGTTC 64819
|||||
Sbjct 560 GGTTC 556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 232427327302436
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |