Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_028869.1 Length=153714 Score E Sequences producing significant alignments: (Bits) Value seq25666 105 7e-18 >seq25666 Length=1659 Score = 105 bits (116), Expect = 7e-18 Identities = 277/419 (66%), Gaps = 8/419 (2%) Strand=Plus/Plus Query 128242 CTGCATCGGTTCCTGACTCTGGGCACCGACGGCGGTACCTACTACACCAACGCCCAGGAC 128301 ||| |||| || |||| ||||| ||||| ||||| || |||||||| || | | Sbjct 326 CTGGATCGCTTTCTGATCCTGGGTACCGAGGGCGGCACATACTACACTGGCGAGCGCAAG 385 Query 128302 CTCACCAAGGAGAACGCCGAGGTCGTCCTGCGCATGGTCGCCGACAAGGGTCTGTACACG 128361 ||||||||||||||||| || || |||||| ||||| ||| | || || | Sbjct 386 CTCACCAAGGAGAACGCGCAGAACGCGCTGCGCCTGGTCCGCGAGGATGGCGTGCGTGTG 445 Query 128362 GTCGGCCAGATCGTCGAGATCTCCACGGCAGGCCGCGCGCCGAAGAACAAGCAGGCGCTG 128421 || || | || |||||| | | || || || || |||||| | | || ||| Sbjct 446 GTGAACCGTGTTGTGGAGATCAGCGACTCCGGTCGTGCTCCCAAGAACGATCCTGCTCTG 505 Query 128422 TTCGCGCTGGCCCTGGCCGCATCGCACGGTGACGACGT---CACTCGTGCTGCTGCGCTG 128478 || | |||||| || || ||| | |||||| || ||| ||| |||||| | Sbjct 506 TTTGTGCTGGCAATG---GCTTCGGCTGCTGACGATGTGAACACCCGTCGTGCTGCATTC 562 Query 128479 GCCGCGCTGCCGCAGGTCGCACGCACGGCGACGCACCTGTTCGAGTTC-CTCAACTACGC 128537 | |||||||| |||| || || | | |||||||||||| | | | || | | || Sbjct 563 GAGGCGCTGCCCAAGGTAGCTCGTATCGGAACGCACCTGTTCCACTACGCTGCA-TTCGT 621 Query 128538 CCAGCAGTTCCGTGGCTGGGGCAAGGGTCTGCAGAAGGCCGTGCTCCGGTGGTACGCGGA 128597 || |||||||||| |||||| | | ||| ||||| ||| | |||||| | Sbjct 622 TGAGGAGTTCCGTGGTTGGGGCCGCGCTTTGCGCAAGGCTGTGGCCAACTGGTACCTCAA 681 Query 128598 CAAGCCGGTCGACCGTGCTGCTTACCAGATGGTCAAGTACCGCCAGCGTGAGGGCTGGA 128656 | || || ||||| || ||||| || |||||| || |||||||| || |||| Sbjct 682 CCAGGATGTTGACCGCTTGGCCAACCAGGTGATCAAGTTCCAGCAGCGTGATGGTTGGA 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 490942475327040