Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq73830 143 8e-30 >seq73830 Length=8306 Score = 143 bits (158), Expect = 8e-30 Identities = 211/297 (71%), Gaps = 4/297 (1%) Strand=Plus/Minus Query 39024 GTCACTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATC--G 39081 || || ||| || ||||||| ||||| ||||||| | |||||| | ||| | Sbjct 6015 GTTACGGCCATATTTCTCGGCCACGTATTCGATCACGCGGTCACGGCCATC--CATGCAG 5958 Query 39082 AAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATG 39141 ||||||| ||| | |||||||||||| || || || |||||||||||||| ||||| | Sbjct 5957 AAGTCGACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAGC 5898 Query 39142 AGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCA 39201 || | | | ||||| |||||||||||| | ||||||| ||| ||||||| Sbjct 5897 AGGTCATATTCCAGCGGGTCGAGGTCGGTGATCTTCTGCACGTACGCAACCAACGAGCCA 5838 Query 39202 GCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAG 39261 || | || || || || || || ||| |||||||| | ||| ||||| ||| ||| Sbjct 5837 GCACCTGACCCCCGGCCCGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAG 5778 Query 39262 TCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39318 || |||| |||||||| ||||| ||||||||| |||| || || | |||| Sbjct 5777 TCCATCACGATCAGGAAGTAACCGGGGAAGCCCATCTGGATGATGATATCCAGCTCG 5721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159463943633832