Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq98467 284 6e-72 seq43102 143 1e-29 >seq98467 Length=19475 Score = 284 bits (314), Expect = 6e-72 Identities = 520/759 (69%), Gaps = 7/759 (1%) Strand=Plus/Plus Query 66467 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGGGC 66526 ||| |||| |||||| | | ||||||| ||| || ||||| || || || | ||| Sbjct 12095 ATTTCCACGGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGC 12154 Query 66527 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 66586 || | || ||||||||||| || |||||||| || || | || ||| || | | Sbjct 12155 CGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTG 12214 Query 66587 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 66646 | ||| | |||||||| || | || | || | | ||||||| |||||| ||||| Sbjct 12215 ATTGCCCAGGCGCAGAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTG 12274 Query 66647 GACCCTGAGTACGCCAAGGC--GCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGC 66704 ||||||||||||||| ||| | || || || | ||| |||| |||| |||| Sbjct 12275 GACCCTGAGTACGCC--GGCAAATTGGGCGTCAACGTTGACGACCTGCTGGTTTCCCAGC 12332 Query 66705 CCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGT 66764 | || ||||| ||||| |||||||| ||| ||| | || || || || | Sbjct 12333 CGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCG 12392 Query 66765 CCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACA 66824 | | |||| || ||||||||||| ||||||||||| || || |||||||||| | Sbjct 12393 ACGTGATCGTGGTCGACTCCGTGGCCGCCCTGGTGCCCAAGGCTGAAATCGAAGGCGAAA 12452 Query 66825 TCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCA 66884 | || |||| ||||| |||||||| || || || ||||| ||||| |||| || ||| Sbjct 12453 TGGGTGACATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCA 12512 Query 66885 CTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGA 66944 | || | |||| | | ||||| ||| | ||| |||||||| | || ||||| Sbjct 12513 CCGGTAACATCAAGAACGCCAACTGCCTGGTGATCTTCATCAACCAGATCCGTATGAAGA 12572 Query 66945 TCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCT 67004 ||||| || | | ||||| || |||||||| || || || || ||| ||||| Sbjct 12573 TCGGCGTGATGTTCGGCAGCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCT 12629 Query 67005 ACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTG 67064 |||| || |||||| |||| |||| || | || | | | ||| ||||| || |||| || Sbjct 12630 ACGCTTCGGTCCGTTTGGACATCCGCCGTACCGGCGCGGTGAAAGAAGGTGACGAGGTTG 12689 Query 67065 TCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAATG 67124 | || | ||||| || || ||||| |||||||| |||||||||| |||| | | Sbjct 12690 TAGGTAGTGAAACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCCCCGCCTTTCCGCCAGG 12749 Query 67125 CCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGG 67184 |||||||| | | ||||| ||||||||| | | | ||| | ||||||||| Sbjct 12750 CCGAGTTCCAGATTCTCTACGGCAAGGGCATCTACCTGAACGGCGAGATGATCGACCTGG 12809 Query 67185 CCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT 67223 ||| ||| || | || |||| || || || |||| Sbjct 12810 GTGTGCTGCACGGTTTCGTCGAGAAATCCGGTGCATGGT 12848 >seq43102 Length=2767 Score = 143 bits (158), Expect = 1e-29 Identities = 216/305 (71%), Gaps = 9/305 (3%) Strand=Plus/Minus Query 66924 TCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACGG 66983 |||||||| | || |||||||||| ||| |||||| ||||||||||||| Sbjct 854 TCAACCAGATCCGGATGAAGATCGGC---GTGATGTACGGCAGCCCCGAGACCACCACGG 798 Query 66984 GCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCG 67043 |||| || || ||| |||||||||||| || || | || | || |||||| | ||| Sbjct 797 GCGGCAACGCCCTGAAGTTCTACGCCTCGGTGCGCCTCGACATACGCCGCATCTCGACCC 738 Query 67044 AGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGC 67103 |||||| |||| ||||| ||||||||| ||| || ||||| || ||||||||| Sbjct 737 TGAAGGATCGCGACGAGGCGATCGGCAACCAGGTCCGCGTCAAGGTGGTGAAGAACAAGG 678 Query 67104 TGGCCCCGCCGCACCGCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTG 67163 | || |||||| | | | ||||||| | || ||| ||| |||||| | ||| Sbjct 677 TCGCGCCGCCGTTCAAGCAGGTCGAGTTCGACATCATGTTCGGCGAGGGCGTGTCGA--- 621 Query 67164 AGGTCG---AACTCCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCT 67220 |||||| | || ||||||| | |||| | ||| | || ||||||| ||||||| Sbjct 620 AGGTCGGTGAGCTGATCGACCTCGGCGTGAAGGCTGGCATCGTCGAGAAGTCAGGCGCCT 561 Query 67221 GGTTC 67225 ||||| Sbjct 560 GGTTC 556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242468688791784