Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= NC_028908.1
Length=72409
Score E
Sequences producing significant alignments: (Bits) Value
seq4281 208 4e-49
>seq4281
Length=1049
Score = 208 bits (230), Expect = 4e-49
Identities = 356/510 (70%), Gaps = 10/510 (2%)
Strand=Plus/Minus
Query 59064 TGAAGCCGATGAAGTAGTGAACCACTTCGAGGGGATACTTCAGCAGTTCAGTGGCAGCAG 59123
|||| |||| |||||| || ||||||||| |||| ||| || ||||| ||||||
Sbjct 573 TGAACCCGACGAAGTAATGCACCACTTCGCGGGGGTACCCGAGTCGTTCAAACGCAGCAT 514
Query 59124 TGAACGTCTGCGGAACCAAGTCAAGACGGCCATCAATGATCCAGTCATAGTCTTCAATCT 59183
||| || |||| |||||||| || ||||| ||||||||||| || || || ||||
Sbjct 513 CGAATGTGAGCGGCACCAAGTCCAGGTCGCCATTGATGATCCAGTCGTAATCCTCGATCT 454
Query 59184 GCACGAACTCATAGTTAGGGTACACCCACTCATCCATCGGGAAGTTCAGACGGAAAGTGA 59243
||||||| || || || || | ||| | || | |||||||||||| || || |
Sbjct 453 GCACGAAGTCGTAATTCGGCGCCTTCCAGTATTCGACCGGGAAGTTCAGCCGCTTTGTCA 394
Query 59244 GATCAGAAGCAGGAGACATCACCTGCGGACTGAAGAACAGAAGGGTGGCCTGTGCATTGG 59303
| ||| | || ||||| | ||| || |||||||||| || ||||||||||||| ||
Sbjct 393 GCTCACTCGATGGCGACATGATCTGAGGGGTGAAGAACAGCAGCGTGGCCTGTGCATCGG 334
Query 59304 GGAAAGCCGCCTTCACCTTGTCTCGGACATAGTTGGTGCTGTCT--CCCAGCTTGGTTCG 59361
|||| | ||||| || |||| || | | ||||| || || |||||||| | |
Sbjct 333 GGAACTCGGCCTTGACGATGTCGCGCATCTGATTGGT--TGACTGGCCCAGCTTAGCGCA 276
Query 59362 GAGCCAATCAATGTAGGGCCACTGGTTATCTG--CCACCGGATCGAAGATCGACTTGATC 59419
|||||||| | ||| || |||| | | | | | || |||||| || |||||||
Sbjct 275 CAGCCAATCGACGTAAGGATACTG--CACCGGGTCGAGCGCATCGAAAATATTCTTGATC 218
Query 59420 ATCGGCATCGGAACATCATTGCCAGTCTCCTGCTTG-TAGAGGTCCATGGTTCGTTGGTC 59478
|||| | || | | ||| |||| | || || || || || | ||| |||
Sbjct 217 CACGGCGTGGGCGCGTACAAGCCCGTCT-CAGCGTGATACAGCTCGAGCGTTGCCGCGTC 159
Query 59479 GTACAGGCAGGGAGCATTCTTGCCTTCCCCGTTGTTGTACGAACCATCCCACCACCACGG 59538
|| | ||| || ||||||| ||||||||||| || || ||||||||||| ||
Sbjct 158 ATAGATGCACGGGCTGTTCTTGCTGGTGCCGTTGTTGTAGGAGCCGTCCCACCACCAAGG 99
Query 59539 TTCCCCGATCTGGAAATACGGCACCATACC 59568
|| ||||||||||| ||||||||||||
Sbjct 98 CTCACCGATCTGGAAGCGCGGCACCATACC 69
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 231210095763320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |