Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_028908.1 Length=72409 Score E Sequences producing significant alignments: (Bits) Value seq4281 208 4e-49 >seq4281 Length=1049 Score = 208 bits (230), Expect = 4e-49 Identities = 356/510 (70%), Gaps = 10/510 (2%) Strand=Plus/Minus Query 59064 TGAAGCCGATGAAGTAGTGAACCACTTCGAGGGGATACTTCAGCAGTTCAGTGGCAGCAG 59123 |||| |||| |||||| || ||||||||| |||| ||| || ||||| |||||| Sbjct 573 TGAACCCGACGAAGTAATGCACCACTTCGCGGGGGTACCCGAGTCGTTCAAACGCAGCAT 514 Query 59124 TGAACGTCTGCGGAACCAAGTCAAGACGGCCATCAATGATCCAGTCATAGTCTTCAATCT 59183 ||| || |||| |||||||| || ||||| ||||||||||| || || || |||| Sbjct 513 CGAATGTGAGCGGCACCAAGTCCAGGTCGCCATTGATGATCCAGTCGTAATCCTCGATCT 454 Query 59184 GCACGAACTCATAGTTAGGGTACACCCACTCATCCATCGGGAAGTTCAGACGGAAAGTGA 59243 ||||||| || || || || | ||| | || | |||||||||||| || || | Sbjct 453 GCACGAAGTCGTAATTCGGCGCCTTCCAGTATTCGACCGGGAAGTTCAGCCGCTTTGTCA 394 Query 59244 GATCAGAAGCAGGAGACATCACCTGCGGACTGAAGAACAGAAGGGTGGCCTGTGCATTGG 59303 | ||| | || ||||| | ||| || |||||||||| || ||||||||||||| || Sbjct 393 GCTCACTCGATGGCGACATGATCTGAGGGGTGAAGAACAGCAGCGTGGCCTGTGCATCGG 334 Query 59304 GGAAAGCCGCCTTCACCTTGTCTCGGACATAGTTGGTGCTGTCT--CCCAGCTTGGTTCG 59361 |||| | ||||| || |||| || | | ||||| || || |||||||| | | Sbjct 333 GGAACTCGGCCTTGACGATGTCGCGCATCTGATTGGT--TGACTGGCCCAGCTTAGCGCA 276 Query 59362 GAGCCAATCAATGTAGGGCCACTGGTTATCTG--CCACCGGATCGAAGATCGACTTGATC 59419 |||||||| | ||| || |||| | | | | | || |||||| || ||||||| Sbjct 275 CAGCCAATCGACGTAAGGATACTG--CACCGGGTCGAGCGCATCGAAAATATTCTTGATC 218 Query 59420 ATCGGCATCGGAACATCATTGCCAGTCTCCTGCTTG-TAGAGGTCCATGGTTCGTTGGTC 59478 |||| | || | | ||| |||| | || || || || || | ||| ||| Sbjct 217 CACGGCGTGGGCGCGTACAAGCCCGTCT-CAGCGTGATACAGCTCGAGCGTTGCCGCGTC 159 Query 59479 GTACAGGCAGGGAGCATTCTTGCCTTCCCCGTTGTTGTACGAACCATCCCACCACCACGG 59538 || | ||| || ||||||| ||||||||||| || || ||||||||||| || Sbjct 158 ATAGATGCACGGGCTGTTCTTGCTGGTGCCGTTGTTGTAGGAGCCGTCCCACCACCAAGG 99 Query 59539 TTCCCCGATCTGGAAATACGGCACCATACC 59568 || ||||||||||| |||||||||||| Sbjct 98 CTCACCGATCTGGAAGCGCGGCACCATACC 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 231210095763320