Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_028961.1 Length=55094 Score E Sequences producing significant alignments: (Bits) Value seq75625 100 1e-16 >seq75625 Length=8981 Score = 100 bits (110), Expect = 1e-16 Identities = 136/184 (74%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 40880 AAGAACCTGCTCGGCATCCCGTGGTGCGTCGCATTCGCACTCCGAGACGACGGCTGGATT 40939 ||| ||||| |||||||||||||| ||||||| ||||| || | | ||||||||| Sbjct 8725 AAGGACCTGATCGGCATCCCGTGGCGCGTCGCCTTCGCGCTGCAGGCAGACGGCTGGTGG 8666 Query 40940 CTGCGCAACGACATCATCTGGCACAAGCCAAACGGCATGCCAGAGAGCGTTACCGACCGG 40999 |||||| | |||||||||||| ||||| ||| ||||| |||||| | ||||| Sbjct 8665 CTGCGCCAGGACATCATCTGGTCGAAGCCCAACCCGATGCCGGAGAGCATCGAGGACCG- 8607 Query 41000 CTTGCCTCCAA---GCATGAGTACGTGTTCATGTTCAGCAAGCAGC-AGCGCTACTGGTT 41055 ||| | | || ||| |||||| ||||| || || ||| ||| |||| ||| | || Sbjct 8606 -TTG-CACGAAGGCGCACGAGTACCTGTTCCTGCTCTCGAAG-AGCGAGCGGTACCGCTT 8550 Query 41056 CGAC 41059 |||| Sbjct 8549 CGAC 8546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175902043251072