Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq73830 136 1e-27 >seq73830 Length=8306 Score = 136 bits (150), Expect = 1e-27 Identities = 206/291 (71%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 39463 GCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATC--GAAGTCG 39520 ||| || ||||||| ||||| ||||||| | |||||| | ||| ||||||| Sbjct 6009 GCCATATTTCTCGGCCACGTATTCGATCACGCGGTCACGGCCATC--CATGCAGAAGTCG 5952 Query 39521 ATGTCCACGTCGGGCATGGAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCG 39580 | ||| | |||||||||||| || || || |||||||||||||| ||||| | || | Sbjct 5951 ACGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAGCAGGTCA 5892 Query 39581 TGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCA 39640 | | ||||| |||||||||||| | ||||||| ||| ||||||||| | Sbjct 5891 TATTCCAGCGGGTCGAGGTCGGTGATCTTCTGCACGTACGCAACCAACGAGCCAGCACCT 5832 Query 39641 GAGCCACGCCCAGGGCCGACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCG 39700 || || || || || || ||| || ||||| | ||| ||||| ||| ||||| Sbjct 5831 GACCCCCGGCCCGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCATC 5772 Query 39701 ACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39751 |||| |||||||| ||||| ||||||||| |||| || || | |||| Sbjct 5771 ACGATCAGGAAGTAACCGGGGAAGCCCATCTGGATGATGATATCCAGCTCG 5721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159987918043400