Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_029066.1 Length=48666 Score E Sequences producing significant alignments: (Bits) Value seq124742 196 1e-45 seq93341 104 7e-18 >seq124742 Length=51505 Score = 196 bits (216), Expect = 1e-45 Identities = 359/518 (69%), Gaps = 6/518 (1%) Strand=Plus/Plus Query 19621 AGCATGATCTATCAGAACGTGGTTTCCGCAGTAGTGCGCGCCCTGGCGAGCGAAGTGATC 19680 ||||||||||||| ||||| ||||| ||||| ||||| || || ||| ||| ||| Sbjct 4746 AGCATGATCTATCGCAACGTTGTTTCAGCAGTGGTGCGGGCGCTCGCGGCCGAGACCATC 4805 Query 19681 AACTCGGCTGGTGGGTGTGACTTTCAACCGAAGGTGCAGGCCGCTCGCGTGCCTGGGGCG 19740 | || || || || || ||||| | |||||||||||| ||| | |||| | Sbjct 4806 AGTTCCGCCGGCGGCTGCGACTTCGAGCCGAAGGTGCAGTGCGCCAAGCAGAAGGGGGAG 4865 Query 19741 ATCTGCGGCAAGGAAGAGGCTTTCCTGACGGACTGCTGGGTGCATGGCCGTCTGCACAAG 19800 ||| ||| ||||| | || ||||| ||||||||||||| || || ||||||||| Sbjct 4866 ATCGTCGGTAAGGAGGCAGCGTTCCTTCAGGACTGCTGGGTGTTCGGTCGGCTGCACAAG 4925 Query 19801 GCGCTGCCGGTCGGCCTGTGGCTGGCTCTCGTGGCCAAGTATTCGACGCACCTAGAGCGC 19860 ||||| | | | |||| ||| || ||||||||||| || || ||| |||||| Sbjct 4926 GCGCTCACCCCAGCGCACTGGCGGGCACTGGTGGCCAAGTACTCCACCCACGAGGAGCGC 4985 Query 19861 AAGCACGACGCAATGATGGCACTGGCCGGCTCGGTGAAGTCACCAGCACCTGGCCGGTTC 19920 ||||| | || || ||| || ||||||||||||| || || || |||||| Sbjct 4986 AAGCATGGTGCCATTCTGGAGTTGTTGAGCTCGGTGAAGTCGCCGGCGCCGAAACGGTTC 5045 Query 19921 GTTCAGTGTGCCGTCGCCACATGGGC-ATTCCCAAAGCTGCCGGGCGTGGAAGGGAAGCG 19979 | | || || || || ||||| ||||| ||| || |||| || ||||| ||||| Sbjct 5046 CGTGAATGCGCGGTGCTGACCTGGGCGATTCCGCAAG-TGGCGGGAGTCGAAGGCAAGCG 5104 Query 19980 CAGC-ACGAGCGTATTGCCGGCCGCATGGTATGACATTAACTCTTGGGATGATGGCGGCA 20038 | | || | || ||||||| || ||||| ||||| | | |||||| | | ||||| Sbjct 5105 CTCCGTCGCG-GTGCTGCCGGCAGCTTGGTACGACATCACCAACTGGGATAACGACGGCA 5163 Query 20039 AGCCAGACTCAACGCTCTACCGTTGGCGTTCTGCGATCCGGCGCAG-CCTAGAGGATCAG 20097 | ||||| || |||| ||||| |||||||| ||| | || | | || || | ||| Sbjct 5164 AACCAGAGTCGACGCGATACCGGTGGCGTTCGCAGATAC-GCACGGTGCTCGATAACCAG 5222 Query 20098 GTCAACGAAGCGCTGATTCATGCGCAAGAAATACTCGA 20135 || || || ||| ||| || || || ||| | || || Sbjct 5223 GTGAATGAGGCGTTGACTCTGGCCCAGGAACTGCTTGA 5260 >seq93341 Length=16452 Score = 104 bits (114), Expect = 7e-18 Identities = 129/175 (74%), Gaps = 9/175 (5%) Strand=Plus/Minus Query 43 ACCAATTTCGTACCGATTAGGCGTTTTCAGCTTGTCCAGTTCGGCCCAATCGGCGCTTGA 102 |||||||| | ||| ||| || ||||| |||| |||| ||||||| | |||||| Sbjct 16273 ACCAATTTGGGACCAATTTGG-------AGCTTTTCCATTTCGCCCCAATCTGAGCTTGA 16221 Query 103 GTTGATCCATTTCGCGTAGTGCTTGAGCAGCGTCTGGATGCTGTTGCCGAGCTGCTGCGC 162 ||||||||| ||| || | ||||||| |||| | ||| | |||||||||||| | Sbjct 16220 GTTGATCCAACGCGCATAAGTCGAGAGCAGCATCTGCACGCTATGGCCGAGCTGCTGGGA 16161 Query 163 GATGAAGGCCGGAGCCATCCCGG-CAGACAGGCAGACGGTCGCATAGGTGTGCCG 216 ||||||||| || ||| || | || | | ||| | |||||||||||||| || Sbjct 16160 GATGAAGGCGGGGTTCATGCCAGACATA-ATGCATATTGTCGCATAGGTGTGACG 16107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155364802368736