Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_029106.1 Length=62220 Score E Sequences producing significant alignments: (Bits) Value seq4281 257 7e-64 seq9455 91.5 6e-14 >seq4281 Length=1049 Score = 257 bits (284), Expect = 7e-64 Identities = 333/456 (73%), Gaps = 8/456 (2%) Strand=Plus/Plus Query 31875 GCCACGCTGCTGTTCTTCACGCCGCAGATCATGTCGCCGGCATCCGATCTCACGAACATC 31934 |||||||||||||||||||| || |||||||||||||| | || || || || Sbjct 345 GCCACGCTGCTGTTCTTCACCCCTCAGATCATGTCGCCATCGAGTGAGCTGACAAAGCGG 404 Query 31935 ATGAACTTCCCGACTGATCACTGGAAGACGCCCAACTACGACTTCGTGCAGATCGAAGAC 31994 ||||||||||| || |||||||| |||| || |||||||||||||||||||| || Sbjct 405 CTGAACTTCCCGGTCGAATACTGGAAGGCGCCGAATTACGACTTCGTGCAGATCGAGGAT 464 Query 31995 TACGACTGGATCATCGCCGGCCGGCTCGACCTGGTTCCTCTGACGTTCGACGCCGCACA- 32053 ||||||||||||||| ||| || ||| |||| || || || ||||| || || Sbjct 465 TACGACTGGATCATCAATGGCGACCTGGACTTGGTGCCGCTCACATTCGATGCTGCGTTT 524 Query 32054 GAACAAGCTTGGTTATCCGCGTGACGTGGTTCACTACTTCACCGGTTTTATCTTGAACGC 32113 |||| | || || || || || || ||||| || |||||| ||| || ||| | || | Sbjct 525 GAACGA-CTCGGGTACCCCCGCGAAGTGGTGCATTACTTCGTCGGGTTCATCCTCAAGGG 583 Query 32114 CTGGGACTATCACATCTGGCCCTGGATCGACAAAGCCATTCGAATGGCTAAGGAAGCGAA 32173 |||||||||||| |||| |||||||||||||| | || ||||| |||||||| || Sbjct 584 TCAGGACTATCACATTTGGCGGTGGATCGACAAAGCGGTCCGCATGGCGAAGGAAGCAAA 643 Query 32174 CATGCCCTACATCTACGTCTGGTCTTACACGCAGGCCATGCGCGACAGCATCGTCTATGG 32233 ||||| ||||||||||||||||| ||||| || || || ||||| ||| ||||| Sbjct 644 TATGCCGTACATCTACGTCTGGTCGTACACCCAAGCGATCCGCGATTCGATCCTCTAT-- 701 Query 32234 CGACGAACTGCCCACCG---CAATGTCTGTGCCCATCTTCGATCTGCCGCCCAACTGGGG 32290 || | ||||| ||| | || | || |||| | || |||||||| |||| | | Sbjct 702 -AACAACCTGCCGCCCGAGCCTTTGGAAGCGCGCATCCTGGACCTGCCGCCGAACTCGAG 760 Query 32291 CGCGACGTATCAGATCACGCGGGACTACAACACCGA 32326 | || || | ||||||| ||||| ||||| Sbjct 761 GTCAGGCTACGAGGTGTCGCGGGAATACAAGACCGA 796 >seq9455 Length=1116 Score = 91.5 bits (100), Expect = 6e-14 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 6214 CGAGATCAAGGAAATGTTCTACCCGGGTTGCGTGGTCAGCATCATGATCCGCCCCTGGGC 6273 ||||||| | ||| | ||||||| || ||| | ||| |||| |||| ||||| ||||| Sbjct 951 CGAGATCCTGAAAACGATCTACCCTGGCTGCATCATCAACATCCTGATTCGCCCTTGGGC 1010 Query 6274 GCAGGACAACGAGTTCGGCAAGAAAATCAACGCCGGCCTGGTCGCCGTGAAGTTC 6328 ||| ||||||| ||||||||||| || || ||| |||| |||| || ||||| Sbjct 1011 TCAGAACAACGACTTCGGCAAGAAGATTAATGCCAACCTGATCGCTGTACAGTTC 1065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198669370339984