Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq86116 111 1e-19 seq115941 87.8 1e-12 seq109654 86.0 4e-12 >seq86116 Length=13258 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || ||||| |||||| ||||| | || |||||||| || Sbjct 3161 ATGCAAATTTTTGTGAAGACCCTTACCGGGAAAACCATTACTTTGGAAGTCGAAAGTTCC 3102 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || ||| || || ||||| || ||| | ||| || | Sbjct 3101 GATACAATTGACAAT--GTGAAAGCTAAGATCCAGGACAAGGAGGGTATCCCGCCTGACC 3044 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | |||||||| || || || | || || | ||| | |||| |||| || | Sbjct 3043 AGCAAAGGCTCATTTTTGCTGGCAAGCAGCTCGAGGATGGACGAACCTTGGCCGACTATA 2984 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || | || ||||| |||||| | ||||| || Sbjct 2983 ACATCCAGAAGGAGTCGACCCTTCACTTGGTGTTGCGTCTCCGTGGTGG 2935 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||||||||| || ||| ||| || |||| || |||||| || Sbjct 3845 ATGCAGATCTTTGTGAAAACTCTTACCGGAAAAACTATCACCCTTGAGGTGGAAAGCTCC 3786 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| ||||| || || ||||| || ||| | || || | Sbjct 3785 GACACCATCGATAAT--GTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCAGACC 3728 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||| || || || | || || | |||| | | | ||||||| Sbjct 3727 AGCAAAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACCCTTGCTGATTACA 3668 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| || |||||| |||| | |||||||| | ||| | ||||| ||| Sbjct 3667 ACATTCAGAAAGAGTCCACTCTTCATTTGGTGCTCCGTCTCCGTGGTGGC 3618 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| |||||||| ||| || || | || ||||||||| || Sbjct 3617 ATGCAAATCTTTGTCAAAACCCTTACTGGAAAAACCATCACCTTGGAGGTCGAAAGCTCC 3558 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || ||||| |||||| | || || | Sbjct 3557 GACACAATTGACAAC--GTCAAGGCCAAGATTCAAGACAAGGAAGGTATCCCACCAGACC 3500 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| | || ||||| || || || || | || |||| || | |||| |||||||| Sbjct 3499 AGCAGAGATTGATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGTACTCTTG-CCGATTAC 3441 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||||| ||| | || ||||| | ||| | ||||| || Sbjct 3440 AACATCCAGAAAGAATCCACCCTTCACTTGGTACTCCGTCTCCGTGGTGG 3391 >seq115941 Length=36387 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || || ||||| |||||| || ||| | || || || ||| || Sbjct 5120 ATGCAGATTTTTGTTAAGACCCTTACCGGGAAAACAATAACATTGGAGGTTGAGAGCTCC 5061 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| ||||| ||| || || || || ||| | || || | Sbjct 5060 GATACTATTGACAAT--GTCAAGGCAAAGATCCAAGATAAGGAGGGTATCCCACCAGACC 5003 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| | | || ||||||||||| ||| | || |||| | | | |||| |||||||| Sbjct 5002 AGCAGAGACTTATCTTTGCCGGAAAGCAACTCGAGGACGGAAGGACACTTG-CCGATTAC 4944 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||| ||| |||| | ||| | || | ||| | ||||| || Sbjct 4943 AACATACAAAAGGAGTCCACTCTCCATCTAGTGCTTCGTCTCCGTGGTGG 4894 >seq109654 Length=28343 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || || ||||| || || |||| ||||| ||| || Sbjct 18420 ATGCAGATATTTGTGAAAACCCTCACCGGGAAGACCATCACCCTTGAGGTCGAGAGCTCC 18361 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| ||||| ||||| ||||| || || |||| | Sbjct 18360 GAC-----ACAATCGACAACGTCAAGGCCAAAATCCAGGACAAGGAGGGAATTCCCCCAG 18306 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | || || || |||||||| | || |||| || | | | |||| | Sbjct 18305 ACCAGCAGCGTCTCATCTTCGCTGGAAAACAGCTCGAGGACGGCCGTACCCTTGCCGACT 18246 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || ||| ||| | |||||||| | ||| | ||||| || Sbjct 18245 ACAACATCCAGAAGGAGTCGACTCTCCATTTGGTGCTTCGTCTCCGTGGAGG 18194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355287841917252