Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq115941 111 1e-19 seq109654 107 1e-18 seq113932 98.7 7e-16 seq86116 98.7 7e-16 seq106905 93.3 3e-14 seq97232 93.3 3e-14 seq86460 93.3 3e-14 seq64237 93.3 3e-14 >seq115941 Length=36387 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| ||||| ||||| || || ||||| || || | || ||||| | | Sbjct 5120 ATGCAGATTTTTGTTAAGACCCTTACCGGGAAAACAATAACATTGGAGGTTGAGAGCTCC 5061 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | || |||| | | || || || ||| | || ||||| || Sbjct 5060 GATACTATTGACAATGTCAAGGCAAAGA-TCCAAGATAAGGAGGGTATCCCACCAGACCA 5002 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || ||||| || |||| | | || | | ||||||||| Sbjct 5001 GCAGAGACTTATCTTTGCCGGAAAGCAACTCGAGGACGGAAGGACACTTGCCGATTACAA 4942 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||||||| |||||||| | ||| |||| Sbjct 4941 CATACAAAAGGAGTCCACTCTCCATCTAGT 4912 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || ||||| ||||||||||| ||||| ||||| || || | | Sbjct 4893 AATGCAAATTTTTGTGAAGACCCTTACGGGAAAAACCATCACCCTCGAGGTCGAGAGCTC 4834 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| | |||| |||||| ||||| || || | || || || || Sbjct 4833 TGATACAATTGACAATGTAAAGGCGAAAATTCAAGACAAGGAGGGAATTCCCCCGGACCA 4774 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || ||||| || || ||| |||| || | | ||| | | |||||||| Sbjct 4773 ACAGAGGTTGATTTTTGCTGGGAAGCAATTGGAGGATGGCAGGACTCTTGCGGATTACAA 4714 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 4713 CATCCAGAAGGAATCAAC 4696 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| |||||||| || ||| | || || || | || Sbjct 5348 ATGCAAATCTTTGTCAAAACCCTCACTGGAAAAACCATAACTTTGGAGGTGGAGAGCTCG 5289 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | ||| | || | || ||||| || || | || ||||| || Sbjct 5288 GACACCATTGACAATGTGAAAGCCAAGA-TTCAAGACAAGGAGGGCATCCCCCCAGACCA 5230 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || || || || || || || | | ||| | | |||||||| Sbjct 5229 GCAGCGGCTTATCTTCGCTGGAAAGCAGCTTGAGGATGGGAGAACTCTCGCTGATTACAA 5170 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || ||||| || | || || ||| Sbjct 5169 CATTCAGAAGGAGTCTACCCTCCACTTGGTT 5139 >seq109654 Length=28343 Score = 107 bits (118), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| ||||| ||||| |||||| | || || || | | Sbjct 17964 ATGCAAATCTTCGTGAAGACCCTTACGGGCAAAACCATCACTTTGGAGGTGGAGAGCTCT 17905 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| ||||| ||||| ||||| | || ||||| || Sbjct 17904 GACACAATTGATAATGTAAAGGCTAAAATCCAGGACAAGGAAGGCATCCCACCAGACCAG 17845 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| || || ||| |||| |||| |||||| | | ||||||||| Sbjct 17844 CAGCGTCTCATCTTTGCAGGGAAGCAATTGGAGGACGGTCGCACTCTTGCTGATTACAAC 17785 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 17784 ATTCAGAAGGAGTCTAC 17768 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || ||||| || |||||||| || || || ||| | Sbjct 19104 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACCATCACTCTTGAGGTCGAGTCCTCC 19045 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || || ||||| ||||| | || || ||||| Sbjct 19044 GATACCATTGACAACGTCAAGGCTAAGATACAGGACAAGGAAGGCATTCCTCCGGATCAG 18985 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || |||||||| || || || || || | || || | | |||||||||| Sbjct 18984 CAGAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGAACCCTCGCCGATTACAAC 18925 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 18924 ATCCAGAAGGAGTCCAC 18908 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || ||||| || |||||||| || || || ||| | Sbjct 18648 ATGCAGATCTTCGTCAAGACCTTGACTGGAAAGACCATCACTCTTGAGGTCGAGTCCTCC 18589 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| ||||| | || ||||| || Sbjct 18588 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAGGGATCCCCCCAGACCAG 18529 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||| || || || || |||| ||| || | | ||||||||| Sbjct 18528 CAGAGGCTGATCTTCGCCGGAAAGCAGCTTGAGGACGGACGTACCCTCGCTGATTACAAC 18469 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||||||| | || || || Sbjct 18468 ATCCAGAAGGAGTCCACACTCCACTTGGT 18440 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| || || || || | | Sbjct 18420 ATGCAGATATTTGTGAAAACCCTCACCGGGAAGACCATCACCCTTGAGGTCGAGAGCTCC 18361 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| ||||| || || | || ||||| || Sbjct 18360 GACACAATCGACAACGTCAAGGCCAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 18301 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || ||||| || || |||| || || | | ||| |||||| Sbjct 18300 CAGCGTCTCATCTTCGCTGGAAAACAGCTCGAGGACGGCCGTACCCTTGCCGACTACAAC 18241 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||| || | ||||| || Sbjct 18240 ATCCAGAAGGAGTCGACTCTCCATTTGGT 18212 >seq113932 Length=32622 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||| ||||| || || || || ||||| || | Sbjct 19333 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTTGAGTCTTCT 19392 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || || || || Sbjct 19393 GACACCATTGACAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCACCGGACCA 19451 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || || || |||| || || ||| |||||||| Sbjct 19452 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTAGCGGATTACAA 19511 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 19512 CATCCAGAAGGAGTCGAC 19529 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||| ||||| || || || || ||||| || | Sbjct 27414 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTTGAGTCTTCC 27473 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 27474 GACACCATCGACAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCACCGGACCA 27532 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || || || |||| || || ||| |||||||| Sbjct 27533 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTAGCGGATTACAA 27592 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 27593 CATCCAGAAGGAGTCGAC 27610 >seq86116 Length=13258 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||||| || |||||||| ||||| | || || || | | Sbjct 3617 ATGCAAATCTTTGTCAAAACCCTTACTGGAAAAACCATCACCTTGGAGGTCGAAAGCTCC 3558 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || ||| ||||| |||||| | || ||||| || Sbjct 3557 GACACAATTGACAACGTCAAGGCCAAGATTCAAGACAAGGAAGGTATCCCACCAGACCAG 3498 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || || ||||| || || || |||| || ||| | | |||||||||| Sbjct 3497 CAGAGATTGATTTTCGCTGGCAAGCAGCTTGAGGACGGCCGTACTCTTGCCGATTACAAC 3438 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| ||||| Sbjct 3437 ATCCAGAAAGAATCCAC 3421 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || |||||||| ||||| || || || || | | Sbjct 3845 ATGCAGATCTTTGTGAAAACTCTTACCGGAAAAACTATCACCCTTGAGGTGGAAAGCTCC 3786 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || ||| | || ||||| || Sbjct 3785 GACACCATCGATAATGTCAAGGCCAAGA-TCCAAGACAAGGAGGGTATCCCTCCAGACCA 3727 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| ||||| || || ||||| | ||||| | | |||||||| Sbjct 3726 GCAAAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGTCGCACCCTTGCTGATTACAA 3667 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || ||||||||||| | ||||| || Sbjct 3666 CATTCAGAAAGAGTCCACTCTTCATTTGGT 3637 >seq106905 Length=25706 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||| ||||| || || || || ||||| || | Sbjct 9324 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTTGAGTCTTCC 9383 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 9384 GACACCATCGACAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCACCGGACCA 9442 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || || || |||| || || ||| |||||||| Sbjct 9443 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTAGCGGATTACAA 9502 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 9503 CATCCAGAAGGAGTCGAC 9520 >seq97232 Length=18783 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||| ||||| || || || || ||||| || | Sbjct 12514 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTTGAGTCTTCC 12455 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 12454 GACACCATCGACAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCACCGGACCA 12396 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || || || |||| || || ||| |||||||| Sbjct 12395 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTAGCGGATTACAA 12336 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 12335 CATCCAGAAGGAGTCGAC 12318 >seq86460 Length=13305 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||| ||||| || || || || ||||| || | Sbjct 11860 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTTGAGTCTTCC 11919 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 11920 GACACCATCGACAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCACCGGACCA 11978 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || || || |||| || || ||| |||||||| Sbjct 11979 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTAGCGGATTACAA 12038 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 12039 CATCCAGAAGGAGTCGAC 12056 >seq64237 Length=5233 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||| ||||| || || || || ||||| || | Sbjct 3316 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTTGAGTCTTCT 3257 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || || || Sbjct 3256 GACACCATCGACAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATCCCACCGGACCA 3198 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || || || |||| || || ||| |||||||| Sbjct 3197 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTAGCGGATTACAA 3138 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 3137 CATCCAGAAGGAGTCGAC 3120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337463866177808