Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq109206 156 4e-33 >seq109206 Length=27697 Score = 156 bits (172), Expect = 4e-33 Identities = 382/576 (66%), Gaps = 5/576 (1%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGT 4603 |||||||| ||||| || || || ||||| |||| || | |||| |||||||| ||||| Sbjct 8006 AAACACGCGAAATCGCAGTGTAACCCTTCATCTC-GCGATATCAACTCGTTAGAGAACGT 8064 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663 | || ||||| || || | || || ||||||||||| ||| || || || || Sbjct 8065 GAGACCCGGCATCAACCCGCGTTTCTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAA 8124 Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723 ||| || || || ||| ||| ||||| | || || | |||| || || | | Sbjct 8125 GAAGATCCCCTCGACGCAGGCGAACGCGATCAACCGCTCCGCGAAAGA---TTCTGAGCC 8181 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 | ||||| | | ||||| | ||| || || || || ||||| || | || || Sbjct 8182 GTCGATCCACCTCATGGCCCACTGAGCCTTCTTGGCCACACAAGGAATGGTCTCGATGGC 8241 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 || ||| | | || ||| ||||||| ||| ||||| || | | || || || Sbjct 8242 GTGAAAGAGGCGGTTCTTCTCAGCCGGGTCTTTAATGTAAGTCTCCAACAAGAGACTGTA 8301 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 ||| ||||| || ||||| || ||||| ||||| || || |||||| | || || | Sbjct 8302 CATCTCAGAGTGAATATTCTCGATAGCGATCTGGAACCCATAAAAGGCACGCGCCTCCGC 8361 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 ||||||| || || || ||| | | | || || || || ||||| ||| Sbjct 8362 GACTTGAATCTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACGATGCCGTCTGAGGC 8421 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 ||||| || || | |||||| || || |||| || || || || | | || | ||| Sbjct 8422 GGCAAAGAAAGCAAGAACATGGGAAATGAAGTGCTTCTCATCGGGAGTCATGTTCTCCCA 8481 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 |||| |||| | | ||| || || || | ||||| ||||| || || || || Sbjct 8482 TTGGGTATTGTCTTGGGAGAGATCCACCTCCTCCGCCGTCCAGAACGAGGCCTCGGCCTT 8541 Query 5084 TTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 |||||||| |||||| || || ||||||||||| Sbjct 8542 CTTGTACATCTCCCAAATCTCCGGGTACTGAATCGG 8577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426360106534508