Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq27057 179 1e-40 seq93341 158 4e-34 seq10919 118 3e-22 seq26594 102 3e-17 >seq27057 Length=1822 Score = 179 bits (198), Expect = 1e-40 Identities = 155/192 (81%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 33997 TGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTGATAGACCTCG 34056 ||||| ||||||| | ||| || | ||| || || ||| || ||||| || |||||| Sbjct 2 TGCTTGCCGATGATGATCTCGGCGATGCCTTTGTGCTCGGTCTCGGGGTGGTATACCTCG 61 Query 34057 TCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGCAGG 34116 || ||||||||||||||||||||||||||||||||||||||||| || || || |||| | Sbjct 62 TCGCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCACCCGATTCCCGCAAG 121 Query 34117 TCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGCGACAGC 34176 || || ||| ||| |||||||| || || || |||||||| ||||||||||| |||||| Sbjct 122 TCGGAGTTCACCGGGCGCTTGTTGGGACGTTGTTCCAGGGAACGGTTGAGCTGGGACAGC 181 Query 34177 ACGATCACGGGG 34188 | | ||| ||| Sbjct 182 GCCACCACCGGG 193 >seq93341 Length=16452 Score = 158 bits (174), Expect = 4e-34 Identities = 188/254 (74%), Gaps = 1/254 (0%) Strand=Plus/Plus Query 4457 GCACCGTGACCACCAAGGACCGGCTGGCCCTGGTCACCGTGTGGATCAGCGGCAGCCCCT 4516 ||||| |||| | | ||||||| |||||||||||||||| | ||| |||| |||| Sbjct 12188 GCACCATGACAATCCCTGACCGGC-GGCCCTGGTCACCGTGATGGTCAAGGGCACGCCCT 12246 Query 4517 ACGTGATCGTCGACATCCGATTGCGGATGCTGAAACCGCGTGAGTTGTACCGCGCCCAGG 4576 ||||||||||||||||| | ||||||||||||| ||| ||| | ||| ||||| | Sbjct 12247 ACGTGATCGTCGACATCTGCCTGCGGATGCTGAAGCCGTCCGAGCTTTACAAGGCCCAAG 12306 Query 4577 GCTTCCCCGACAGCTACATCATCGAGCGGGGCCACAACGGGCAGCGGTTCACTCTATCCC 4636 ||||||| | |||||||||| | ||| | |||| ||| |||||| | | Sbjct 12307 GCTTCCCGGCGGACTACATCATCAGCCACGGCGCCGACGGCGAGCCGTTCACCAAGACTC 12366 Query 4637 AGCAGGTCCACATGTGCGGCAACAGCGTGAGCCCGAACACGATGGCCGCATACGCCCGGG 4696 ||||||| ||||||||||| |||||||| |||||| | ||||| || || ||| Sbjct 12367 AGCAGGTGCACATGTGCGGAAACAGCGTCAGCCCGCCGCCAATGGCAGCGCTTGCAAGGG 12426 Query 4697 CGAACGACCCATGG 4710 | ||||| |||||| Sbjct 12427 CAAACGATCCATGG 12440 Score = 107 bits (118), Expect = 6e-19 Identities = 123/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 40028 TCCCACTTCAGCGTCACGGTGCCGTCGTCATTGAAGACCATGTCGATGCCGTCCGTCTCG 40087 |||||| | |||||||| | | |||| || ||||| ||||||||||| || ||||| Sbjct 1002 TCCCACCTTAGCGTCACTGAGTCGTCATCGTTGAACGTCATGTCGATGCACTCTGTCTCT 1061 Query 40088 GATAGCAGTTCCATCACCTGATCCCACGCTTCATCCGGATCCGTGTCCAGGCGATGGATC 40147 || |||| | ||||||||| |||||| | || |||||||||||| ||||||||| Sbjct 1062 GACAGCAATCCCATCACCTCCTCCCACTCCATGTCTCCATCCGTGTCCAGCCGATGGATC 1121 Query 40148 GTCACCGTGCGCAGGTCCTGCGCTTTCGG-TGAGTTGATCATC 40189 |||||| ||| | |||||| ||| ||| ||||||||| Sbjct 1122 GTCACCCATCGCTGAATCTGCGCGACCGGATGA-TTGATCATC 1163 Score = 87.8 bits (96), Expect = 6e-13 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 5192 AAAGAACGTCCGATCCTATTCAGCGGGCCGATGGTTCGAGCCATCCCGGAAGGCCGGAAG 5251 || ||||| || ||||| ||| | ||||||||| || ||||||| ||||||||||||| Sbjct 13561 AAGGAACGGCCCATCCTGTTCTCGGCGCCGATGGTGCGCGCCATCCTGGAAGGCCGGAAG 13620 Query 5252 ACGGTCACGCGCCGAGTCGTGAA 5274 |||||||||||||| | ||||| Sbjct 13621 ACGGTCACGCGCCGGGCGGTGAA 13643 >seq10919 Length=1139 Score = 118 bits (130), Expect = 3e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 34046 GATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGG 34105 |||| |||| || ||||| ||||| | ||| ||||||||||||||||||||| |||| Sbjct 299 GATACTCCTCCTCGCGGTAGACGAAGAGGATGACGTCGGCGTCCTGCTCGATCTGCCCGC 240 Query 34106 ACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGA 34165 ||||||||||| ||| |||||| ||||| | |||||| |||||||| |||| | | Sbjct 239 TGTCGCGCAGGTCGGACGGCATCGGGCGCTTATCCGGCCGGCGCTCCAGGTCGCGGCTCA 180 Query 34166 GCTGCGACAGCACGATCACG 34185 |||||| || | | || ||| Sbjct 179 GCTGCGCCACCGCCATGACG 160 >seq26594 Length=1759 Score = 102 bits (112), Expect = 3e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 47900 GCTGACACTGACCCTCTGTACCAGGCGGCTGTTGAGTTCGTCCGCGAAACCCGGCGAGCG 47959 ||||| || ||| | |||||| | | ||| || | ||||| | |||| ||| || || Sbjct 201 GCTGAAACCGACGCGCTGTACGACGAGGCCGTGGCCTTCGTACTGGAAAGCCGTCGCGCT 260 Query 47960 TCGATTTCGGCGATCCAGCGCAAGCTGAAGATCGGCTACAACCGCGCAGCCCGCATCATC 48019 |||||||| ||| | || || ||| |||| ||||||||||||||||| |||||||| ||| Sbjct 261 TCGATTTCCGCGGTGCAACGTAAGTTGAAAATCGGCTACAACCGCGCCGCCCGCATGATC 320 Query 48020 GAGCGGATGGAGAAAGAAGGCGTAGTCACAGCGGCCGACAGCAACGGCGGCCGCGAGGT 48078 || ||||| | | || || ||||| || ||| ||||||| ||||| || Sbjct 321 GAAGCCATGGAAATGGCCGGTGTCGTCACTGCAATGAACACCAACGGCTCGCGCGAAGT 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160211565657240