Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_030921.1 Length=49768 Score E Sequences producing significant alignments: (Bits) Value seq75625 145 2e-30 >seq75625 Length=8981 Score = 145 bits (160), Expect = 2e-30 Identities = 326/481 (68%), Gaps = 28/481 (6%) Strand=Plus/Minus Query 42257 CGGCGAGCCCGGCCAGTACGGGTTGGAGGCCTCGCCAGCCGACTACGTCGAGACGATGCG 42316 ||||| | ||||||| |||| | |||| | |||| || | ||| | |||| Sbjct 8981 CGGCGTGGACGGCCAGATCGGGCTTGAGGACACGCCCAGCGCGTTCGTGGCCGAGATGGT 8922 Query 42317 CGCGCTTTTCGCCGAGCTGCGCCGCGTGCTCGCCGACGACGGCACCCTCTGGCTCAACCT 42376 ||| | |||||||| | ||||||||||| | | |||||||| ||||||||||| || Sbjct 8921 CGCAGTCTTCGCCGATGTCCGCCGCGTGCTTCGCAAGGACGGCACGCTCTGGCTCAATCT 8862 Query 42377 GGGTGACAGTTACTCCGGATCGTGGGGTAACCAGGGGCGCAAAGAGGAGCGCGGTACCCA 42436 ||| ||||| ||| | ||||| ||||| ||||| | ||| | | || |||| Sbjct 8861 GGGCGACAGCTACGCTGGATCCTGGGGCGCCCAGG----CCAAGGGCGTCACG---CCCA 8809 Query 42437 GCGGCCGATCAACGGCGGCATGATCACGCCCGTCCACGACGGCCGCTATCCCTCGCAGGG 42496 ||| ||||| | | || || |||| |||| | |||| || || Sbjct 8808 GCGA--GATCAGCCG------GAACAG---CGTC-ACGAA-----CCATCCGAAGCGGGC 8766 Query 42497 CAGCAACACTGGTGCGATCAAGCCGGGCGCCC-CACCCGCGAAGAACCTCATGGGCATTC 42555 || | || || | ||| | || || || || | ||||| |||| || ||||| | Sbjct 8765 CAAGCAGACCGGCACCATCCGGGAGGCCGGCCTCAAGC-CGAAGGACCTGATCGGCATCC 8707 Query 42556 CGTGGCGTGTCGCGTTCGCGCTCCAGGACGACGGATGGATCTTGCGGAACGAGGTGATCT 42615 ||||||| ||||| |||||||| |||| ||||| ||| |||| | || | |||| Sbjct 8706 CGTGGCGCGTCGCCTTCGCGCTGCAGGCAGACGGCTGGTGGCTGCGCCAGGACATCATCT 8647 Query 42616 GGTCGAAGCCAAACGGTATGCCGGAGAGCATCACTGACCGGTTGTCGAAGCGTCACGAGC 42675 |||||||||| ||| ||||||||||||||| ||||| | ||||| |||||| Sbjct 8646 GGTCGAAGCCCAACCCGATGCCGGAGAGCATCGAGGACCGTTGCACGAAGGCGCACGAGT 8587 Query 42676 ACGTGTTCATGTTCGCGAAG-TCGACTCGCTACTGGTTCGACCTCGACCCAATCCGCGAG 42734 || ||||| || || ||||| ||| || ||| | |||||| ||| ||||| |||| Sbjct 8586 ACCTGTTCCTGCTCTCGAAGAGCGA-GCGGTACCGCTTCGACGCCGAGGCAATCGCCGAG 8528 Query 42735 C 42735 | Sbjct 8527 C 8527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158885654803760