Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_030929.1 Length=49033 Score E Sequences producing significant alignments: (Bits) Value seq124742 351 3e-92 seq25364 212 2e-50 seq93341 196 2e-45 seq27595 158 4e-34 seq98467 111 5e-20 >seq124742 Length=51505 Score = 351 bits (388), Expect = 3e-92 Identities = 612/888 (69%), Gaps = 2/888 (0%) Strand=Plus/Plus Query 7045 CAATGAAGACCACGCCCACCTACAAGACGCTCCTCTCGCTTTCCTATGGGCTGCCTCCAG 7104 ||| |||||||| ||||| |||| || | || || | ||||| | || || Sbjct 11193 CAACGAAGACCATGCCCATCTACTGGATGTAGGCATCCGGGTCATGTGGGCGTCGTCTAG 11252 Query 7105 CTTCACCAAGCAGGGGAGGACGGTACTGGGTCAGTGCGAAGAGGTGACGTTCCGCTGTGG 7164 |||| |||||||| ||||| || ||||| ||| ||| |||| |||||||| || Sbjct 11253 CTTCGAGAAGCAGGGAAGGACAGTCCTGGGCCAGGCCGAGCAGGTAGCGTTCCGCGCGGG 11312 Query 7165 AGCCTGGCAGAAGGGTAGGCAGGAACAGCAGATGATCCGTTGGTTCGGATACCTGCCGAG 7224 | ||||||||| | | ||| || |||||| | ||||||||| | ||||| Sbjct 11313 TGGCTGGCAGAAAGCCCGAATGGAGCAACAGATGCACGATTGGTTCGGCGATGTGCCGGC 11372 Query 7225 GTTTCTGATCACCCTGGCTGCTGACTACTGCTCCCAGTGCTCCGACGCGGAGTTCTGCGC 7284 || | |||||| |||| |||||||||||| |||||||| |||| ||||||||||| Sbjct 11373 CTTCATCATCACCTTGGCCGCTGACTACTGCGCCCAGTGCAGCGACCTTGAGTTCTGCGC 11432 Query 7285 ATTGGTCGAGCATGAGCTCTACCACATCTGCCAAGAGCACAACCAATATGGCGAGCCCAA 7344 || |||| || ||||| || ||| | || | | || | || || | || Sbjct 11433 CCTGATCGAACACGAGCTGTATCACCTGGCTCACGCTACCGACAAGTACGGTCAACCAGC 11492 Query 7345 GTTCACCGAGGAGGGCTTTCCAAAGCTGAAGCTCCGCGGGCATGACGTCGAGGAGTTCGT 7404 |||||| | || || || ||| | ||||| | | || |||||||| |||||||| Sbjct 11493 ATTCACCCAAGACGGTGCACCGAAGATCAAGCTGCAGAGCCACGACGTCGAAGAGTTCGT 11552 Query 7405 CGGCGTGGTGAGGCGGTACGGCCCAAGCAAGGACGTGCAGTATCTCATCGACGCTGCTAG 7464 ||| ||||| | || ||||| ||||| ||||| || | | || ||||| | Sbjct 11553 CGGTGTGGTCCGCCGCTACGGTGCAAGCCCTGACGTTCAAGCGTTGGTGGATGCTGCAAA 11612 Query 7465 CAGGCCTCCAGAGGTGGCCAAAATTAACATTTCGAGAGCCTGCGGTACGTGCCTGCTGAA 7524 ||| ||| | ||||||| ||| | |||||| |||| |||||||| || || ||||| | Sbjct 11613 CAGTCCTGCTGAGGTGGGGAAATTGAACATTGCGAGGGCCTGCGGAACCTGTCTGCTCAG 11672 Query 7525 GTCGGCAT-AGCCACGACAGGCCCATGACAGGAAGAAAAACGATGGCAACCCTGAACAGC 7583 ||||| | | ||||||| ||| |||| || ||||||| |||||| || Sbjct 11673 ATCGGCCTGAAATTTGACAGGCATTAGAC-GGAATCCAATTTATGGCAAACCTGAATAGT 11731 Query 7584 GACGTGAAGGCGTTCATCGTTCAGGCGCTGGCCTGTTTCGATACGCCATCCCAGGTTGCG 7643 || ||||| | |||||||||||||| |||| || || || || || || ||||| | Sbjct 11732 GAGGTGAAAGGCTTCATCGTTCAGGCCTTGGCGTGCTTTGACACCCCCTCTCAGGTGGTA 11791 Query 7644 GAATCGGTCAAGAAGGAATTCGGCATCGAGGTCAGTCGGCAGCAGATCGAGTCGCACGAC 7703 || | ||||| | ||||||||||| ||| || || |||| || ||||| || Sbjct 11792 GAGGCCGTCAAACAAGAATTCGGCATTGAGATCTCCCGTCAGCTTTGTGAATCGCATGAT 11851 Query 7704 CCGAACAAGGTGTGCAGCAAGGGCCTTGCCGCGAAGTGGCGGATCCTCTTCGAGGACACC 7763 ||| |||| | |||||| ||| || || || ||| || ||| || | |||||| Sbjct 11852 GCGACCAAGCGGGCGAGCAAGACCCTCGCGGCCAAATGGGTGACCCTGTTTCACGACACC 11911 Query 7764 CGCAAGCGCTTCCGCGAGGAGATCGCCGACATCCCGATCGCCAACCGCGCCTACCGACTG 7823 ||||| || ||| | ||||||| ||||| || || ||||||||||| | ||||||| Sbjct 11912 CGCAAACGATTCAGGGAGGAGACGGCCGAGATACCAATCGCCAACCGTTCTCACCGACTT 11971 Query 7824 AGGGCATTGGGTCGGATGGCTGAGCGCGCCGAGGGCATGCGAAACATGGCCCTGGCTGCC 7883 | | | || || ||||||||| ||||| ||||| ||||| || || ||||| Sbjct 11972 CGCACGCTTGGGCGCATGGCTGAGAAAGCCGAAAGCATGAAGAACATTGCACTCACTGCC 12031 Query 7884 CAGCTTTACGAGCAGGCCGCCAAGGAGTCGGGTGGCATGTACAGCAAC 7931 ||||| | |||||||| ||||| |||| || | ||| ||| |||| Sbjct 12032 CAGCTATTGGAGCAGGCAGCCAAAGAGTGTGGCGACATCTACGTCAAC 12079 >seq25364 Length=1633 Score = 212 bits (234), Expect = 2e-50 Identities = 292/403 (72%), Gaps = 8/403 (2%) Strand=Plus/Minus Query 3369 TTCCGCATCCAAGGCGCTGCCGGCATCCGTCCGGCTTTC-GTCGCGGCCTGGAACCTCAT 3427 ||||||||||||||||| |||||| | ||| ||| || ||| ||| |||| Sbjct 668 TTCCGCATCCAAGGCGCAGCCGGCCTGAAGATGGCCTTCCGTAGCG-CCTACGACCTGTG 610 Query 3428 CCAGGGGCTGATGAAAGAAGCACAGGGTGGCTACGAGCTGGTTCTACGCCCTCTCAAGTC 3487 |||| ||| ||| || | | || ||||||||||| || || || | ||||| Sbjct 609 CCAGCAGCTTATGGGGGAGGGC---GCTGCGTACGAGCTGGTCCTGCGTCCCATGAAGTC 553 Query 3488 GAAGCGCTCCATTGAGCAGAACAAGCGGTACTGGTCCCTTCTGCGCGAGCTGGCCGCCGT 3547 |||||| || ||||||||||||||||| |||||| ||| ||||||||| | || || Sbjct 552 GAAGCGTTCTATTGAGCAGAACAAGCGCTACTGGCTCCTGCTGCGCGAGATCGCTGCGAC 493 Query 3548 CGCCTGGGTCGACAACCGCCAGTTCGACGATCAGGTCTGGCACGAACAGTTCAAGCGCTG 3607 ||||||| | || |||||||||| ||| || ||||||||| ||||||||| Sbjct 492 CGCCTGGCTAAACGGCCGCCAGTTCAGCGACGAGACCTGGCACGAGTTCTTCAAGCGCAC 433 Query 3608 GTTCATCGGCTGCGAGGACGTGAAGTTGCCGGACGGCTCGACCGAGTTGCGCGGCATCAG 3667 |||||||||||||| || | |||| |||||| | |||||| | ||||||||||| Sbjct 432 CTTCATCGGCTGCGACGAGATCGCCATGCCCGACGGCACCACCGAGCTACGCGGCATCAG 373 Query 3668 CACCACGAAGCTGACCGTAGACGAGTTTGGAATCTACATGACCAAGATCGAAGCGTGGGC 3727 |||||||||||||| || || ||||| || ||||||| | ||||| |||||| Sbjct 372 CACCACGAAGCTGAAGGTCGATGAGTTCGGCGACTACATGCTGCATATCGAGCAGTGGGC 313 Query 3728 CGCCGAGCAAGGGTGGCCGCTGATGATGCAGGAGGTCGCATGA 3770 || ||||| || | | ||| ||||| || ||| |||||| Sbjct 312 TGCTGAGCAGGGCT--TCCCTG-TGATGGAGAAGGCAGCATGA 273 >seq93341 Length=16452 Score = 196 bits (216), Expect = 2e-45 Identities = 377/549 (69%), Gaps = 19/549 (3%) Strand=Plus/Minus Query 33748 CTCAAGGGGCGCCATCGGGTTCTTCTTGATCAGACCGTCCTTCACAGCGGAATCTAGGAT 33807 ||| ||| |||| |||||||||| |||||| | || || || |||| |||||| Sbjct 15626 CTCTAGGATCGCCGCCGGGTTCTTCGGGATCAGCTCCTCGGACATTGCCGAATTTAGGAT 15567 Query 33808 CGTCGACAGCTTGAACATCGCGTTTCGCTTCACGCCTGGCGACGTCCACTCGATGCTGCT 33867 ||||||||||| | |||||||| |||||||| || || ||| ||||||| || | Sbjct 15566 GGTCGACAGCTTCGAGATCGCGTTGCGCTTCACCCCGGGTGACTTCCACTCCCTGGAGGC 15507 Query 33868 GATGATTCGGCGCAAGAGGGTAGGGGTGATCTGATCAAGCCGGGCTACTGCTAGATGTGG 33927 |||| ||||||| ||||| | ||||||| |||| | || | | ||||| || Sbjct 15506 CATGACCCGGCGCAGCAGGGTGGTGGTGATCAGATCGATGCGCACCAGGGCTAGGCCGGG 15447 Query 33928 CATCCAGTATTGGTTGAGGATGCTCTTGTAGTT--CTTGCGTGTCCCAAGCACGATCTCT 33985 |||||| || |||| || || ||||||||| | | |||| || ||| | ||| Sbjct 15446 CATCCAATAGCGGTTTAGCGCGCCCTTGTAGTTGGCCTTCGTG--CCGGCCACCACCTCC 15389 Query 33986 CGGCTGTCTAGCCAGAGTTGAGCATGCTCACCGAACAGGGGGATTTGGCTGCTGACCGAT 34045 || || || |||||||| || |||| ||| || || | ||| | || |||| Sbjct 15388 CGACTATCCAGCCAGAGCTGGGCATACTCGCCAAA---GTTGATCTTGC----CACCG-- 15338 Query 34046 TCCGCAATCGC-AGACCCGGGGAAGAACTCTGCATACCGGGCTTCATCCATGATGCCCAG 34104 || | || || | |||||| | ||| || ||| | | ||||| | | ||||| Sbjct 15337 -GCGACGTTGCTGGAACTGGGGAACAGCTCGGCGTACTTGTCGTCATCGAGCAGCCCCAG 15279 Query 34105 CTTGAT--TGCCTGGACTACCTGATCTCTAAGACCGGATGCAGTCTTAATCCCTTTTTGC 34162 | |||| |||| ||| ||||| || || |||| ||| || ||||| || Sbjct 15278 CCTGATCAGGCCT--TTTACTTGATCAACAACCTGTGAGGCAGACTTGATTCCTTTCTGT 15221 Query 34163 GTCGCGGGATAGGGGAGTGTTTCGCACTTCCTTGTTCCGTTCCACATGAAGCGGATACGG 34222 |||| |||||||||||| ||||| | || | ||||||||||| |||||||| ||| Sbjct 15220 GTCGGGGGATAGGGGAGCGTTTCACTGCGCCGGCTGCCGTTCCACATAAAGCGGATGCGG 15161 Query 34223 ATAGAGTTGCCGATGACTTCCACCCCGGTGGGCATACCCAAAGGCTTTCGAGCCATTCGT 34282 || || | | || |||| || | ||||| ||||| |||||||||||||||||| Sbjct 15160 ATCGATCCGTGGTGGAGGTCCATTCCTGCGGGCAAACCCATTGGCTTTCGAGCCATTCGT 15101 Query 34283 CGTATCTCC 34291 ||||||| Sbjct 15100 AATATCTCC 15092 Score = 111 bits (122), Expect = 5e-20 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 33116 TGTAGCTTCTCCAACTCGCTCCAATCCGAGGCGGAGTTCAGCCACTTGGCATAGGTCGAT 33175 || ||||| |||| |||| |||||| ||| ||||| | ||| ||||| ||||| Sbjct 16255 TGGAGCTTTTCCATTTCGCCCCAATCTGAGCTTGAGTTGATCCAACGCGCATAAGTCGAG 16196 Query 33176 AGCAGCATCTGCACGCTGTGGCCTAGCTGTCCAGCGATAAACGCAGGGTTCATGCCAGCC 33235 ||||||||||||||||| ||||| ||||| | ||| || || ||||||||||||| | Sbjct 16195 AGCAGCATCTGCACGCTATGGCCGAGCTGCTGGGAGATGAAGGCGGGGTTCATGCCAGAC 16136 Query 33236 ATCAGGCACATGGTCGCGTATGTGTGGCG 33264 || | ||| || ||||| || ||||| || Sbjct 16135 ATAATGCATATTGTCGCATAGGTGTGACG 16107 >seq27595 Length=1905 Score = 158 bits (174), Expect = 4e-34 Identities = 254/365 (70%), Gaps = 0/365 (0%) Strand=Plus/Plus Query 40648 TCATGCTGCCACCCCTAGCACCTTTTCCATGCGCTCCTCGAGCAGTTCGTAGAAGGTCTT 40707 |||||| || || || || || | |||||| || || |||||||||||||||| | Sbjct 985 TCATGCGGCTACTCCCAGAACGCGATTCATGCGTTCATCCAGCAGTTCGTAGAAGGAGAT 1044 Query 40708 TACTCGCTCGGACAGCTTGCGTATGTAGGCCTCATCGCGGTGGACGCGCACCATGCAAAG 40767 || || | | |||| || | ||||| |||| | ||| || | | || Sbjct 1045 GACGCGGGCCTGGATCTTGGCGATCAGCTCGTCATCCCGGTACGCACGCTTCACGAACAG 1104 Query 40768 CGGCATGCCTGGCCAGTAGCCGAGGAAGTCGATCCACTCGCGCTCCGAAACCCAAAGGCC 40827 ||||||||| |||||||||| || ||||||||||||||||||||| || ||||| ||||| Sbjct 1105 CGGCATGCCCGGCCAGTAGCTGATGAAGTCGATCCACTCGCGCTCGGATACCCATAGGCC 1164 Query 40828 TCCATAGCACTGAGCCGCGTGCTCGGAAGGCAGCTCGCCTGCGATGATCACGCTAACCAG 40887 | | |||||| || ||| || || | |||||| |||| |||||| | ||| | Sbjct 1165 GGCCTGGCACTGGGCGATGTGTTCCTTGGGGATCTCGCCGGCGAGGATCACACCGACCTG 1224 Query 40888 CTTTTCCGGTACCTTGGTTTTCACCTCTATCAGGCCGTTGTCGCCGACCAGTCCATCCGG 40947 | || | ||| | || | ||| | |||||||| ||||| || || || || Sbjct 1225 AAACTTGGGCAGCTTCGACTTGATCTCGACCAGGCCGTCAGTGCCGATCAAGCCGTCAGG 1284 Query 40948 CGAATAGCCGATCCCGTGGTTCAGAATGATCCCGGCCTGCTGGATCTGATCTGGCTCGGT 41007 ||| |||||||| || ||||| || ||||||||| |||| | | || | | |||||| Sbjct 1285 CGAGTAGCCGATACCATGGTTGAGGATGATCCCGACCTGGTCGGTCCGGCATTCCTCGGT 1344 Query 41008 ATCTG 41012 |||| Sbjct 1345 GTCTG 1349 >seq98467 Length=19475 Score = 111 bits (122), Expect = 5e-20 Identities = 195/280 (70%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 31674 GGCGACGGCTGGCGGTACCGCGGGCGCGGGCTGCTGCAGATCACCGGCCGGGCGAACTAC 31733 ||||||||| | ||| || || | |||||| | ||||| |||||||| |||||| Sbjct 10977 GGCGACGGCCAGAAGTATCGGGGCAGGGGGCTGATCCAGATTACCGGCCGCCGCAACTAC 11036 Query 31734 CGCGCCGCCGGCGACGGGCTG---GGCCAGCCGC---TGGAGCAGGAACCCGAGCTT-CT 31786 | ||| || | | ||| ||| | || || || |||||| || || || Sbjct 11037 CTGGCCTGTAGCCAGGCACTGTTTGGCGATGAGCGTTTGTTGCGGGAACC-GACATTGCT 11095 Query 31787 CGAGCAACCGGAGTGGGCGGCGATCTCGGCGGCCTGGTGGTGGGCCAGTCACGGCTTGAA 31846 ||||| ||| | |||||||| ||||||||||||| ||| || | ||| |||| Sbjct 11096 GGAGCAGCCGCAATGGGCGGCCGAGTCGGCGGCCTGGTTCTGGCAAAGCAATGGCCTGAA 11155 Query 31847 CGACCTGGCCGACCGCGGCGAGTTCGCCGCCATCACTCGGCGCATCAACGGCGGCACGAA 31906 || ||||||||| | ||||| || ||||||| ||||| ||||||||||| || Sbjct 11156 TGAACTGGCCGACAAGGATCAGTTCACCACCATCACCCGGCGTATCAACGGCGGGCTCAA 11215 Query 31907 CGGCCAGGCGGAGCGCCTGGCGCTGTGGGAGCGGGCGAAG 31946 || | || ||| ||| || |||||||| |||||||||| Sbjct 11216 TGGGCTGGAGGATCGCTTGCAGCTGTGGGCGCGGGCGAAG 11255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156537354858440