Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_030931.1 Length=41871 Score E Sequences producing significant alignments: (Bits) Value seq124121 922 0.0 seq93341 91.5 4e-14 >seq124121 Length=49848 Score = 922 bits (1022), Expect = 0.0 Identities = 942/1219 (77%), Gaps = 20/1219 (2%) Strand=Plus/Plus Query 26458 ATGCCCGAAAATACCGCTGACCTGCTCAAGCAGGTATCCGCTGAGCTGGAGAAGGCCTCC 26517 ||| |||| | ||| ||||| || || ||||| ||||| ||||||||| |||||| Sbjct 22189 ATGTCCGACACCACCCACGACCTACTAAAACAGGTCTCCGCCGAGCTGGAGCGTGCCTCC 22248 Query 26518 AGCGACTTCAGCAAGAAAGCCGAGGCCGCCCTGGACGAAGCCAAGAAGGCCGGCAGCCTG 26577 |||| ||||||||| | ||||||| ||| || ||||||| ||||| ||| | || Sbjct 22249 AGCGCCTTCAGCAAACAGGCCGAGGAGGCCATGAACGAAGCGCGCAAGGCTGGCGGTCTA 22308 Query 26578 TCC-AGCGAAACCAAGGCCGCCGTCGACGAACTGGCGACCAAGTTCAACAGCCTGACCGA 26636 || ||| ||||||||| | ||||||| || |||||| || ||||||||||| ||||| Sbjct 22309 TCGGAGC-AAACCAAGGTCACCGTCGATGAGCTGGCGCTGAAATTCAACAGCCTCACCGA 22367 Query 26637 GGCCGAGAAGCAGCTGAAGGCCAAGCTCGGCGAGTTGGAGCAGGAGTTCGCCCGCTCGCC 26696 ||||| | |||||||| || ||||||||| | |||||||| |||||||| ||| Sbjct 22368 AGCCGAAATTCAGCTGAAAACCCGCCTCGGCGAGATCGAGCAGGAATTCGCCCGGCTGCC 22427 Query 26697 CAGC--AATGGCGCGCCCGCCGCCCGCGATACCGTCGGCGGCATCGTGATCAAGAGCGAG 26754 |||| || ||| | | |||| | | | | ||||| | ||| |||| ||||| Sbjct 22428 CAGCCCAACGGCAATCGCCCCGCAGG--ACAGCCTCGGCACCTGCGTCGTCAAAAGCGAA 22485 Query 26755 GCGCTGAAGCAGTTCGCCGCGAGCGTGGAGGGCGGAAAGCGCGTCAGCATTCCCGTTCAG 26814 || || || |||||||| ||||| || || || |||||| |||| ||||| || | Sbjct 22486 GCACTCAAAGCCTTCGCCGCCAGCGTCGAAGGTGGCAAGCGCATCAGTATTCCGGT---G 22542 Query 26815 AACGC------TCTGATCAGCACCGACATCCCCACCGGCGTGGTTGAGCCGCAGCGCCTT 26868 ||||| |||| || || || || ||| |||| ||| | || || ||||||| Sbjct 22543 AACGCAGCGCTTCTG-TCG--ACGGATATTCCCGCCGGTGTGATCGAACCTATGCGCCTT 22599 Query 26869 CCTGGCATCGACGTGATGCCGAAGCAGCGCCTGTTCATTCGCGACCTGATCGCTCCGGGG 26928 || |||||||||| | || ||||| ||||||||||| |||||||||||||| || || Sbjct 22600 CCCGGCATCGACGCTTTACCCAAGCAACGCCTGTTCATCCGCGACCTGATCGCCCCAGGC 22659 Query 26929 CGCACCACTTCGCCGGCGATCTTCTGGGTTCAACAGACCGGCTTCACCAACGCCGCCGCA 26988 || ||||| |||| ||||| |||||||| ||||| ||||||||||| ||||||||||| Sbjct 22660 CGAACCACCGCGCCTGCGATTTTCTGGGTCCAACAAACCGGCTTCACTAACGCCGCCGCT 22719 Query 26989 GTCGTGCCGGA-GAACACCGCGAAGCCGTACAGCAGCATCACGTTCGGCACCAAGATCAC 27047 || |||||||| | || || || || || |||| |||||||| ||| ||||| Sbjct 22720 GTTGTGCCGGAAGGGCAA-GCCAAACCCTATTCGGACATCCAGTTCGGCATCAAAATCAC 22778 Query 27048 CCCGGTGACCACCATCGCGCACATGTTCAAGGCGTCCAAGCAGATCCTTGATGACTTCGC 27107 | | || ||||| |||||||||||||||| || ||||||| ||||||||||||||| | Sbjct 22779 CGCCGTTTCCACCCTCGCGCACATGTTCAAAGCTGCCAAGCAAATCCTTGATGACTTCAC 22838 Query 27108 TCAACTGCAGTCGACCGTGGACACCGAGATGCGCTTCGGCCTGAAGTATGTCGAAGAGCA 27167 |||||||| || ||| | |||| ||||||||||| |||||| ||||| || || ||| | Sbjct 22839 CCAACTGCAATCCACCATCGACATCGAGATGCGCTACGGCCTCAAGTACGTGGAGGAGGA 22898 Query 27168 GGAGATCCTGTTCGGCGATGGCACCGGCGCGCACCTCGACGGCATCGTGCCGCAAGCCTC 27227 ||||||||||||||||| |||||||| | |||||| ||||||| ||||| || ||||| Sbjct 22899 TGAGATCCTGTTCGGCGACGGCACCGGTGTCCACCTCCACGGCATAGTGCCCCAGGCCTC 22958 Query 27228 TGCGTTCAGCGCCGCCTTCGCGGTCGAGCAGCAGAACGGTATCGATGACCTGCGCCTGGC 27287 || ||| | | ||||| |||| | |||| |||||| ||||||||||||||||| Sbjct 22959 GGCATTCGCCCCGGCCTTTTCGGTGCAAGAGCAATCCGGTATTGATGACCTGCGCCTGGC 23018 Query 27288 GATGCTGCAGGCCCAGCTGGCGCGCCTGCCGGCATCCGGCCACGTTCTGCACTTCATCGA 27347 |||||||| ||||| || ||||| ||||| | ||||| ||||||||||| ||||| Sbjct 23019 AATGCTGCAAGCCCAACTCGCGCGACTGCCCTCCAGTGGCCATGTTCTGCACTTTATCGA 23078 Query 27348 CTGGGCGAAGATCGAGCTGACCAAGGACACCCTGGGCCGCTACATCCTCGCCAACCCGCT 27407 |||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||||| || Sbjct 23079 CTGGGCCAAGATCGAGCTGACCAAAGACACCTTGGGCCGCTACATACTCGCCAACCCTCT 23138 Query 27408 GGGCCTGGCCGGCCCGCTGCTGTGGGGCCTGCCGGTGGTTGCCACTGAAATCGCCGCGTT 27467 |||||| || || || || ||||||||||||| ||||| || || || | | ||| Sbjct 23139 GGGCCTCGCTGGGCCTGTGTTGTGGGGCCTGCCAGTGGTGGCGACCGAGGCCAGTGGGTT 23198 Query 27468 CCAGGGCAAGTTCCTGACTGGTGCGTTCCAGACCGGCGCGCAGATCTTCGATCGCGAAGA 27527 | |||||||||||||| || || |||| || ||||||||| | ||||| || ||||| Sbjct 23199 TGAAGGCAAGTTCCTGACCGGCGCCTTCCGTACTGGCGCGCAGTTGTTCGACCGGGAAGA 23258 Query 27528 CGCCAACGTGGTGATCTCCACCGAGAACGCCGACGACTTCGAGAAGAACATGATCTCGAT 27587 ||| ||||| |||||| |||||||||||| |||||||||||||| ||| ||||||| || Sbjct 23259 CGCTAACGTAGTGATCAGCACCGAGAACGCGGACGACTTCGAGAAAAACCTGATCTCCAT 23318 Query 27588 CCGTTGCGAAGAGCGCCTGGCGCTGGCCGTGAAGCGCCCCGAGGCGTTCATCTACGGCAC 27647 ||| || ||||| ||| | || ||||||||||||||||||||||| || ||| | ||| | Sbjct 23319 CCGCTGTGAAGAACGCGTCGCCCTGGCCGTGAAGCGCCCCGAGGCCTTTATCCATGGCCC 23378 Query 27648 CTTCACCCCGCCGGCTCCG 27666 |||||| ||| || ||| Sbjct 23379 ATTCACCGTGCCTGCGCCG 23397 Score = 744 bits (824), Expect = 0.0 Identities = 933/1276 (73%), Gaps = 33/1276 (3%) Strand=Plus/Plus Query 24105 GGCGATCTGGACGACTTCACCTCCAACCCGATCATGGTAGGCCTCTGATGGGCGACAAAA 24164 ||||||| |||| |||| | ||| ||||||||||| ||| | ||| || ||| Sbjct 19072 GGCGATCGCGACGGCTTCTTCAACAATCCGATCATGGTGGGCGTTTGAC---CGTGAAAC 19128 Query 24165 A---GAAACCCGGGCG-GTTCAAGTCCGCCTTGCTCGATTGGCTCGGAGTGCCTATCGGA 24220 ||||||||| || || | | ||||||||| | |||||| | ||||| ||||| Sbjct 19129 TCTGGAAACCCGGACGAGTGCGTG-CCGCCTTGCAACACTGGCTCCGCGTGCCCATCGGC 19187 Query 24221 TTGACCGACGGCGCGTTCTGGCAGGAGTGGTTCGGAACCTCGGCGAGCGGAAAGAACGTG 24280 || ||||| || ||||||||||| |||||||| ||||| ||||| || ||| Sbjct 19188 CTGCCCGACAAGGCCTTCTGGCAGGAATGGTTCGGCACCTCCAGCAGCGGTAAAGCCGTA 19247 Query 24281 ACCGTCGATAAGGCCTTGCAGCTCTCGACGGTATGGGCGTGCGTGCGGCTTCTCTCGGAG 24340 | |||||| || ||| || |||||||| ||||| ||||||||| | |||||||| Sbjct 19248 TCGGTCGATTCCGCAATGCGCCTGTCGACGGTCTGGGCCTGCGTGCGGTTGCTCTCGGAA 19307 Query 24341 TCGGTGTCCACGCTGCCGCTGAAACTCTACCGGCGCCTTCCGGACGGCTCCCGCGAGCAG 24400 || || ||||| |||| ||||| ||||||||||| || || || || || || || | Sbjct 19308 TCCGTTTCCACCTTGCCACTGAAGCTCTACCGGCGACTGCCCGATGGTTCTCGTGAACCC 19367 Query 24401 GCCAAGGATCATCCGCTGTTCAGGCTGCTTTGCCGTACGCCGAATGCCGAGATGACCCCG 24460 |||| || |||||||||| | | | || ||||| | || ||| || ||||||||| Sbjct 19368 GCCACCGACCATCCGCTGTACCGCGTACTGTGCCGCTCACCAAATCTTGAAATGACCCCG 19427 Query 24461 CAGCGCTTCATGCTGATGGTGGTGGCGAGCATCTGCCTGCGTGGAAACGCCTTCGTCGAG 24520 ||||||||||||||||||||||| || ||| ||||||||||||| |||||||| ||||| Sbjct 19428 CAGCGCTTCATGCTGATGGTGGTCGCCAGCCTCTGCCTGCGTGGCAACGCCTTTATCGAG 19487 Query 24521 AAGAAGATGATCGGCACTCGCGTTGTTGCGCTTGTCCCGTTGCTGCCTCAGTACATGCGG 24580 ||||| | ||||| || | || ||||| || || ||| |||| || | |||| | Sbjct 19488 AAGAAAGTCATCGGTCTGCGATTGGTGGCGCTGGTGCCTTTGTTGCCGCAATGCATGACG 19547 Query 24581 GTGAAGCGCGAAGACAGCGGTCGCCTGAAGTACACCTACACCGA--GAACGGTGTGGAGC 24638 || |||||| |||| ||||||| || ||||| ||||| ||| ||| | | ||| Sbjct 19548 GTCAAGCGCCTGGACAACGGTCGCTTGCAGTACCTCTACAACGAAGCAAC--AGGGCAGC 19605 Query 24639 GCGTCATTCCAGAGAAGAACCTGATGCACATCCGTGGCTTCGGCCTGGATGGCGTCTGCG 24698 ||| || | || ||| ||||| | ||||||||||||||||| ||||| ||| |||||| Sbjct 19606 GCGAGATCTCGGAAAAGCACCTGGTACACATCCGTGGCTTCGGACTGGACGGCATCTGCG 19665 Query 24699 GCATGCTCCCGGTGACCATGGGCCGCGAAATCTTCGGTTCGGCGATGTCTGCCGAGGAGG 24758 ||||| | ||| | |||| |||||||| |||||||| | | ||||| || ||||||| Sbjct 19666 GCATGTTGCCGATCACCACTGGCCGCGACATCTTCGGCGCCTCAATGTCGGCGGAGGAGG 19725 Query 24759 CCGCCGCCAAGGTGTTCGCCCAGGGCATGCAGGCTTCCGGGATTCTCAGCGGTG-ATACG 24817 |||| |||||||| |||||| | ||| |||| || || || | |||| || || | || Sbjct 19726 CCGCAGCCAAGGTCTTCGCCAACGGCCTGCAAGCCTCGGGTTTCCTCACCGTTGAAGGCG 19785 Query 24818 ACTCT--------------CACCCCGA------AGCAGCGAGAAGATCTTCGGGCCAGCC 24857 | || ||||| || | || || ||| || || |||| Sbjct 19786 GCGCTGCACAAGGCGCAGGCACCCTGACCAAAGAACAACGCGAACTCCTGCGCAAGAGCC 19845 Query 24858 TGACCGCCTTCATGGGATCGCAGAACGCCGGAAAGATCATGGTTGCCGAGGCCGGCCTGA 24917 || | |||| | ||| | |||||||| || | |||||| || || ||||||| Sbjct 19846 TGGAGGAATTCAGCAGCTCGAAAAACGCCGGTAAAACCATGGTGCTGGAAGCGGGCCTGA 19905 Query 24918 AGTACCAGGGGATCACGATGAACCCCGAAGCTGCGCAGATGCTGGAGTCGCGGTCGTTCA 24977 ||||||| || ||||| |||||||||||||| ||||||||||||||| | || | |||| Sbjct 19906 AGTACCAAGGCATCACCATGAACCCCGAAGCCGCGCAGATGCTGGAGACCCGCGCCTTCA 19965 Query 24978 ACGTCGAGGAGATGTGTCGTTGGTTCCGCGTCCCGCCGTTCATGGTGGGGCACATGGACA 25037 | ||||| ||||| || || ||||| || || |||||||||||||| ||||||||| || Sbjct 19966 ATGTCGAAGAGATCTGCCGCTGGTTTCGTGTGCCGCCGTTCATGGTCGGGCACATGACCA 20025 Query 25038 AGCAGTCCAGCTGGGCCAGCTCTGTGGAGGCGCAGAACCTCCACTTCCTGACCAATAGCC 25097 ||||| ||| |||||| ||| || || || ||||| || ||||| ||||| |||| Sbjct 20026 AGCAGAGCAGTTGGGCCGCGAGTGTCGAAGCACAAAACCTGCATTTCCTCACCAACAGCC 20085 Query 25098 TCCGGCCGCTGCTGGTGAACATCGAGCAGGAGATCACGCGCTGTCTGATCGGCGAGGCCG 25157 | || ||| || ||||||| ||||| ||||| |||| ||||| ||||||| |||| || Sbjct 20086 TGCGTCCGTTGTTGGTGAATATCGAACAGGAAATCAATCGCTGCCTGATCGACGAGAACG 20145 Query 25158 ATGCGGATGAGTTCTTCGCCGAGTTCGCAGTTGAGGGGCTGCTGCGCGCCGACAGCACCG 25217 | || || | | |||||| ||||||||| || || || |||||||| || |||||| ||| Sbjct 20146 ACGCAGAAGGGATCTTCGTCGAGTTCGCCGTAGAAGGTCTGCTGCGTGCTGACAGCGCCG 20205 Query 25218 CCCGTGCGGCTTGGTACAACACTGCACTGCAGAACGGCTGGATGAGCCGTAACGAGGTCC 25277 || || || || | || || ||| |||||||||| | ||| ||||| |||| Sbjct 20206 GTCGCGCCAGTTTCTATATCAGTGGTCTGACTCACGGCTGGATCAACCGCAACGAAGTCC 20265 Query 25278 GTCGCCTGGAAAACCTGCCACCAATCGAAGGCGGGGATGTCTTCACCGTGCAGTCCGCGC 25337 | || | |||||||| || |||||| ||||| || ||||||| || ||| ||||| Sbjct 20266 GCCGTTTTGAAAACCTACCGCCAATCCCTGGCGGTGAGATCTTCACGGTCCAGGCCGCGA 20325 Query 25338 TGGTTCCGCTGGAGCA 25353 ||||| | || ||||| Sbjct 20326 TGGTTTCCCTTGAGCA 20341 Score = 212 bits (234), Expect = 2e-50 Identities = 294/409 (72%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 25570 CCATGACTATCAAATCGCTTCCGACGGCGCCGGCGGCTCGACCGCGCGCGGACGTTTCCT 25629 ||||||| ||||| | || ||| |||||| | | |||| | || | | ||| Sbjct 20377 CCATGACCCTCAAAACCCTGCCGCTAGCGCCGCAGTTGCAACCGTGTGCCCAACTATCCG 20436 Query 25630 GCGACCTGATGCCCAAGGCGCTGGAGCGCTGGAACCCAGCCATTCGCGCTGCGG-TGGAG 25688 |||| | |||| ||| |||||||| ||||||||| | || || || || | ||| Sbjct 20437 GCGAGGTTCGGCCCTTGGCCCTGGAGCGTTGGAACCCATCGATCCGAGCGGCAAATAGAG 20496 Query 25689 GAAGAGAACAGCATCAGCATCTTCGACCCGATCGGGTACGACTGGTGGACTGGCGAGGGC 25748 | ||| |||||||| |||||||||||| ||||| | ||| ||||| ||||||||| Sbjct 20497 -ATGAGCACAGCATCTCCATCTTCGACCCTATCGGCTTCGATCCCTGGACAGGCGAGGGC 20555 Query 25749 GTCACGGCCAAGCGCATCAGCGCCGCGTTGCGAGCCATGAAGGATGCCGACGTGGTGGTG 25808 ||||| || || ||||| ||||||||| || | || | | || ||||| |||| Sbjct 20556 GTCACCGCGAAACGCATTGCCGCCGCGTTACGCACTATCGACGGCGCTGACGTTACGGTG 20615 Query 25809 AACATCAACAGCCCTGGCGGAGATGTCTTCGAGGGGCTGGCGATCTACAACCTGCTGCGC 25868 ||||||||| || ||||| || | ||||| || ||||| ||||||||||||||||| Sbjct 20616 AACATCAACTCGCCGGGCGGCGACATGTTCGAAGGCCTGGCTATCTACAACCTGCTGCGG 20675 Query 25869 GAGCACAAGGGCAAGGTCACCGTACGCGTGCTCGGCCTGGCAGCTTCCGCAGCGTCGTTC 25928 ||| || ||||||||| | | ||||| || ||||| || || ||||| || | Sbjct 20676 GAGTACTCCGGCAAGGTCGTCATCAAGGTGCTGGGGCTGGCCGCATCGGCAGCATCAATT 20735 Query 25929 ATTGCCATGGCGGCCGATGAGGTGAAGATCGCCCGCGCCGGCTTCCTGA 25977 |||| ||||| | || |||||| |||||||||||||| || |||| Sbjct 20736 GTTGCTATGGCCGGAGACGAGGTGCGCATCGCCCGCGCCGGATTTCTGA 20784 >seq93341 Length=16452 Score = 91.5 bits (100), Expect = 4e-14 Identities = 75/89 (84%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 9496 TCAGACCACTCTCCGATACAGCCTGGCGATGGGGAG--CCAGGTGGATCGGGCAGTTAAC 9553 |||| ||| ||||||| |||||||| | ||||||| ||||| | ||||||||||||| Sbjct 1938 TCAGTTCACACTCCGATGCAGCCTGGTGCTGGGGAGTACCAGG-GCTTCGGGCAGTTAAC 1880 Query 9554 GTCAGGCTGACGTGGCGCTGGCTGTTCAG 9582 | ||||||| ||||||||||| ||||||| Sbjct 1879 GACAGGCTGTCGTGGCGCTGGTTGTTCAG 1851 Score = 86.0 bits (94), Expect = 2e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 5913 GCTGGGTTCTCGACGATATAGCCGAGGGCGCGGATCCGCTTCTCCTCGGCGTTGAACGCG 5972 || ||||| ||||| ||||| ||||||| | | | | || |||||||||| ||| Sbjct 13004 GCCGGGTTTTCGACTTCGTAGCCCTGGGCGCGCAGCTGATCGGCCACGGCGTTGAAGGCG 12945 Query 5973 GGGTAGTTGAAGTCGGGAATGCCGGTCATGGGGCCGGACAAGTAGACGCG 6022 ||||||||||||||||| ||||| ||||| || |||| || ||| || || Sbjct 12944 GGGTAGTTGAAGTCGGGGATGCCAGTCATCGGCCCGGCCACGTACACCCG 12895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133655008996696