Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq99290 129 1e-25 seq58664 107 4e-19 >seq99290 Length=20010 Score = 129 bits (142), Expect = 1e-25 Identities = 77/81 (95%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 2850 CTGGGGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTT 2909 ||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 19772 CTGAGGGCCTATAGCTCAGTTGGTCAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTT 19713 Query 2910 CGAGTCCGTGTGGGCCCACCA 2930 | ||||||||||||||||||| Sbjct 19712 CAAGTCCGTGTGGGCCCACCA 19692 >seq58664 Length=4202 Score = 107 bits (118), Expect = 4e-19 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 2884 GACTCATAATCCTTTGGTCCACGGTTCGAGTCCGTGTGGGCCCACC-ACCTTCAAAGCCG 2942 ||||||||||||||||||||||||||| |||||||||||||||||| | | ||||||| Sbjct 2567 GACTCATAATCCTTTGGTCCACGGTTCAAGTCCGTGTGGGCCCACCAAACAAGAAAGCCG 2508 Query 2943 CGCACTGCGCGGCTTTCGCCTTTCTG 2968 |||| ||||||||||||| | |||| Sbjct 2507 CGCATTGCGCGGCTTTCGTGTGTCTG 2482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104152693765288