Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_031029.1 Length=93686 Score E Sequences producing significant alignments: (Bits) Value seq43093 87.8 1e-12 >seq43093 Length=2766 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/223 (70%), Gaps = 15/223 (7%) Strand=Plus/Plus Query 6597 GCGATCAAGCGGATCGCCGATCAGCTCGGAGTCCATCCCGAGGCGTTGCGCAATTGGGTT 6656 |||||| || |||||| | || |||| | | |||| || ||||||| |||||| Sbjct 2550 GCGATCCAGTCGATCGCGGCCAAGATCGGTTGCTCTGGCGAGACGCTGCGCAAGTGGGTT 2609 Query 6657 CGTCAGGCCGAG----ATCGACGGCGGGGTCC--GCCCGGGCACCACGAGTGAGGACGCT 6710 || || |||||| ||||| | |||| | | ||| |||||| |||| || Sbjct 2610 CGCCAAGCCGAGCGAGATCGAGGCAAGGGTACAAGGCCG---ACCACGGACGAGGGCG-- 2664 Query 6711 GACCGCATCGCGGCGTTGGAGCGGGAGAACCGTGAACTGCGGCGAGCGAACACGATCTTG 6770 | || ||| ||| |||||||||||| ||| || || |||| || ||| |||| | Sbjct 2665 -AGCGGATCAAGGCCCTGGAGCGGGAGAGCCGCGAGCTCCGGCAGGCCAACGAGATCCTC 2723 Query 6771 AAGCAGGCTTCGGCTTTCTTTGC---GGCGGAGATCGACCGCC 6810 ||| |||| ||||| | ||||| ||||||| ||||||||| Sbjct 2724 AAGAAGGCGTCGGCGTATTTTGCCCAGGCGGAGCTCGACCGCC 2766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299186566781092