Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq109206 174 2e-38 seq128333 96.9 5e-15 seq26752 86.0 9e-12 >seq109206 Length=27697 Score = 174 bits (192), Expect = 2e-38 Identities = 386/579 (67%), Gaps = 0/579 (0%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||||| || ||||| || || | |||||||||| || || |||||||| || ||| Sbjct 8006 AAACACGCGAAATCGCAGTGTAACCCTTCATCTCGCGATATCAACTCGTTAGAGAACGTG 8065 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 ||||| ||||| | || ||||| || ||||||||||| || ||| ||| || ||| Sbjct 8066 AGACCCGGCATCAACCCGCGTTTCTTTAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAG 8125 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT 48317 || || || || ||| || || ||| | | | ||| || || || | || Sbjct 8126 AAGATCCCCTCGACGCAGGCGAACGCGATCAACCGCTCCGCGAAAGATTCTGAGCCGTCG 8185 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||||| ||||| | ||||||||| |||||||| || || || || || | | Sbjct 8186 ATCCACCTCATGGCCCACTGAGCCTTCTTGGCCACACAAGGAATGGTCTCGATGGCGTGA 8245 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 ||||| ||| || ||| ||||||| |||||| || | || ||||| ||||| Sbjct 8246 AAGAGGCGGTTCTTCTCAGCCGGGTCTTTAATGTAAGTCTCCAACAAGAGACTGTACATC 8305 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 || ||||||||||| || || || ||||| || || ||||| | ||| || | || Sbjct 8306 TCAGAGTGAATATTCTCGATAGCGATCTGGAACCCATAAAAGGCACGCGCCTCCGCGACT 8365 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || | |||| | || | | | || | |||||| || || || || || ||| Sbjct 8366 TGAATCTCCTTCATGAACCTTCCGGCGAGATTCTCCAAAACGATGCCGTCTGAGGCGGCA 8425 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCA 48617 || || || | ||||| ||| || | || || | || ||||| || | ||| | Sbjct 8426 AAGAAAGCAAGAACATGGGAAATGAAGTGCTTCTCATCGGGAGTCATGTTCTCCCATTGG 8485 Query 48618 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTA 48677 | | |||| || | ||| || || || || ||||| || || ||||| || || || Sbjct 8486 GTATTGTCTTGGGAGAGATCCACCTCCTCCGCCGTCCAGAACGAGGCCTCGGCCTTCTTG 8545 Query 48678 TACATATTCCATATATCACTGTATTGGATTGGGAAAATA 48716 ||||| | ||| || || ||| || || ||||| ||| Sbjct 8546 TACATCTCCCAAATCTCCGGGTACTGAATCGGGAACATA 8584 >seq128333 Length=65618 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || |||| ||| |||||| | ||| |||| ||| || Sbjct 22603 CCCCCTTGATCAACATAACGAGCAGTGTCATTGAAAACTCGTACCATAGGAACAATGCCA 22662 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || |||||||||||||| ||| ||||||||| || | || ||||| || || || Sbjct 22663 TTTGATGTTCCATTTGTCCCACGAATATAACTCCCCGTAGCACGAATGTTGTGAACTGAA 22722 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || || | ||| || |||||| |||||||| || Sbjct 22723 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCGTATATG 22782 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 || || || || ||||| ||||| | ||| || ||||| Sbjct 22783 CCTTCAATGCTATCATCTTTCATGCACAAAAGGAAGCAGCT 22823 >seq26752 Length=1779 Score = 86.0 bits (94), Expect = 9e-12 Identities = 259/397 (65%), Gaps = 10/397 (3%) Strand=Plus/Plus Query 78144 CCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAAC 78203 || || || || || |||||||| || | || | |||||||| || || || | | | Sbjct 4 CCTGGGCGCTTGTTGCCTCCCTGGTCGACGTAGCGAGCGGTGTTGTTGTAGACACGAAGC 63 Query 78204 ATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGA 78263 || || | | |||||| || || ||||| || ||| ||| ||| ||| | || ||| Sbjct 64 ATGGGCACGAGACCGTTGGAAGTGCCATTGGTGCCACCAATGTAAGCGCCAGTGGCACGA 123 Query 78264 ATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTC 78323 || | || | || || || || || |||| || || | ||||| || Sbjct 124 ATGCGGTGAGTGTTGAGACCAATACCACCAGCGTTCTTGGAGATCATGGCGCAGATCTTG 183 Query 78324 AATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGAC 78383 | ||||||||||||||||| || ||||||||| |||||| | || || || | | Sbjct 184 AGAGTATCGTAGATACCCTCAATGCTGTCATCCTTCATGTCGATGAGGAAGCAAGACGCC 243 Query 78384 ATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTT 78443 | || ||| || ||||| | || | || || || ||||| || || | || Sbjct 244 AGCTGTGCCTGAGGGGTACCTGCGCTGAAGAGCGTAGGGGAGGCATGTGTGAAGTACTTG 303 Query 78444 TCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC----CCATTGATGAATTC 78498 | || | |||| ||||| || || || || | || ||||| || | |||| | Sbjct 304 TTGGACATGTAG-TTGTAGGTCTCGATTGCGGCCTCGATGTCGTCGCCGTGGATG----C 358 Query 78499 CTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 | || || |||||||| | ||| ||||| ||||| || Sbjct 359 CGACAGCAACACGCATGATCATGTGCTGTGGTCTCTC 395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693518463200640