Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq81301 105 4e-18 >seq81301 Length=11159 Score = 105 bits (116), Expect = 4e-18 Identities = 187/270 (69%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 830 AAGGATGATCGCACCGGCACCGGCACGCTGAGCAAGTTCGGCGCCCAGCTGCGGTACGAC 889 |||| |||||||||||||||||||| | | ||| | | ||| ||| | || Sbjct 1954 AAGGGCGATCGCACCGGCACCGGCACCAAGGCCGTGTTTGCCCGTCAGTATCGGCATAAC 1895 Query 890 CTCACCGAGGGCTTCCCGCTGGTCACCACGAAGCGCGTCCACTTCAAATCGGTTGCGTAC 949 | |||| |||||||||||| | ||||| ||| | ||||||||| | || || Sbjct 1894 TTGGCCGACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCACTTCAAAAGCATCGCCAAC 1835 Query 950 GAACTTCTGTGGTTCCTCAGTGGCGACACGAACGTGAAGGCGCTCAACGACAACGGCGTC 1009 ||| | | ||| | | || ||| |||| || | || ||||||||| |||||||| Sbjct 1834 GAATTGATCTGGATGTTGAGCGGCAACACCAATATCAAATGGCTCAACGAAAACGGCGTA 1775 Query 1010 ACCATCTGGGACGAGTGGGCCGACGCCGGCGGAAACCTCGGTCCTGTCTACGGCGCGCAG 1069 | ||||||||||| |||||| || | ||| |||| || || || ||||||| ||| Sbjct 1774 AAGATCTGGGACGAATGGGCCACCGAAGACGGTGACCTGGGCCCGGTGTACGGCGAACAG 1715 Query 1070 TGG-CGGCACTGGCATGTCGAGGACGGAGG 1098 ||| | || ||||| | ||||||| || Sbjct 1714 TGGACCGC-CTGGCCGACCAAGGACGGTGG 1686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 295653081000876