Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_031077.1 Length=41760 Score E Sequences producing significant alignments: (Bits) Value seq24404 131 4e-26 seq26725 127 5e-25 >seq24404 Length=1558 Score = 131 bits (144), Expect = 4e-26 Identities = 151/200 (76%), Gaps = 5/200 (3%) Strand=Plus/Plus Query 9952 ACCGCAAATGCCGACTGATCCCGTTCCAGTTCTCTACTGTTCAGACCTATGCGCTGGAGT 10011 ||||||| ||||| |||||||||||| ||||| || | |||||||| | ||||||| Sbjct 1268 ACCGCAAGTGCCGGCTGATCCCGTTCGAGTTCAGCACCGAGCAGACCTACGTCCTGGAGT 1327 Query 10012 TCGGTCACCAGTACATGCGCGTTATCAAAGATGGCGCGCT-GGTGCTGAACAGCAGCAAC 10070 |||||||||||||||| ||| | |||| |||||| ||| ||||||||| | || | Sbjct 1328 TCGGTCACCAGTACATCCGCTTCATCACCAATGGCG-GCTACCTGCTGAACATCGGCCA- 1385 Query 10071 GTTATTTATGAGATCGCTACGCCATACGCTGAAGCCGATCTCTTTCGCATCAAGTTCACC 10130 || | |||||| | ||||| |||| |||||||| || || | | || | |||| Sbjct 1386 --GATCTTCGAGATCTCCACGCCCTACGTGGAAGCCGACCTGTTCAACCTGAACTACACC 1443 Query 10131 CAGAGCGCTGACGTTCTGAC 10150 ||| ||||||||| ||||| Sbjct 1444 CAGTCCGCTGACGTGCTGAC 1463 >seq26725 Length=1775 Score = 127 bits (140), Expect = 5e-25 Identities = 203/290 (70%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 1232 TTCGACGAAGCCTCAAACATTGCCGATCTGGTGTGGGAGGTTGCCGAGGGTGCGCTGACG 1291 ||||||||||| ||| | |||| | | ||||| || |||||||||| ||||| Sbjct 1155 TTCGACGAAGCATCAGCGGTGCCCGACAAGATTTGGGAAGTGGCCGAGGGTGGCCTGACT 1096 Query 1292 GACGAGGACACCGAAATCATCTGGGTGGCGTTCGGTAACCCGACGCGTAACACCGGGCGT 1351 |||| || ||| ||||| | | ||||| ||||| || || | |||||| || Sbjct 1095 GACGGCGAG-CCGT-----TCTGGTTCGTCTTCGGCAACCCCACCCGGACCACCGGCCGC 1042 Query 1352 TTCCGCGAGTGCTTCCGCAAATACCGGCATCGCTGGAAGTGCGCGCAGATTGACAGCCGC 1411 ||||| ||||||| ||||| | ||| |||||||||||| | ||||| ||||||||| Sbjct 1041 TTCCGTGAGTGCTGGCGCAAGTTCCGCCATCGCTGGAAGACCCGTCAGATCGACAGCCGC 982 Query 1412 ACCGTTGAGGGCACCAACAAAGAGCAACTGCAAAAGTGGGTGGACGACTACGGCGAAGAC 1471 | || || ||||| || | | | |||||| | ||||||||||||||| Sbjct 981 CAGGCCAAGATGACGAACAAGGACCTGATCAAGCAGTGGGCTGCCGACTACGGCGAAGAG 922 Query 1472 AGCGACTTCGTGAAGGTGCGTGTACGCGGCATCTTCCCTGACGCGTCTGA 1521 ||||||| | ||||| || || || ||| | ||||| |||||||| Sbjct 921 TCCGACTTCTTCAAGGTTCGCGTGCGTGGCCTGTTCCCGTCTGCGTCTGA 872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133300367780464