Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq73830 129 2e-25 >seq73830 Length=8306 Score = 129 bits (142), Expect = 2e-25 Identities = 206/291 (71%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 40116 CCGTACTTCTCGGTGACGTACCTGATCACGTCGCCCCGTCGCCGGTCATC--GAAGTCGA 40173 || || ||||||| ||||| ||||||| | | || ||| ||| |||||||| Sbjct 6008 CCATATTTCTCGGCCACGTATTCGATCACGCGGTCACG--GCCATCCATGCAGAAGTCGA 5951 Query 40174 TGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGT 40233 ||| | |||||||||||| || || || |||||||||||||| ||||| | || | | Sbjct 5950 CGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAGGAACCGTTCGAACAGCAGGTCAT 5891 Query 40234 GCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCA-GTAGGCGACCAGCGAACCGGCAGCC 40292 | ||||| ||||| ||||| | ||| ||| || |||| ||| || ||| | Sbjct 5890 ATTCCAGCGGGTCGAGGTCGGTGAT-CTTCTGCACGTACGCAACCAACGAGCCAGCACCT 5832 Query 40293 GAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCG 40352 || || || || || || ||| |||||||| | ||||||||| ||| ||||| Sbjct 5831 GACCCCCGGCCCGGACCTACCGGTACGCCGTTGTTCTTGGCCCACTGGATAAAGTCCATC 5772 Query 40353 ACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCG 40403 |||| ||||||||| ||||| |||| ||||||||| || || | |||| Sbjct 5771 ACGATCAGGAAGTAACCGGGGAAGCCCATCTGGATGATGATATCCAGCTCG 5721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159888874100128