Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_031097.1 Length=52077 Score E Sequences producing significant alignments: (Bits) Value seq60391 84.2 7e-12 >seq60391 Length=4507 Score = 84.2 bits (92), Expect = 7e-12 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 45900 GTGATCGTCGGCGGCGAGT-CTGGCCACGGCGCACGGCCGATGCATCCCGACTGGGCGCG 45958 |||||||||||||||||| | |||| || ||| || || || | |||| |||| ||| Sbjct 4222 GTGATCGTCGGCGGCGAGAGCGGGCCGCG-CGCCCGCCCACTGAACCCCGCGTGGGTGCG 4164 Query 45959 ATCCCTGCGTGACCAGTGCGTCGCGGCTGGGGTGCCGTTCATGTTCAAGCAGTGGGGCGA 46018 || ||||||||||||||| || || ||| | ||| | |||||||| ||||| || Sbjct 4163 GTCTATGCGTGACCAGTGCGCAGCACAGGGCGTGGCCTTCTTCTTCAAGCAATGGGGGGA 4104 Query 46019 GTGGGCGCCG 46028 |||| |||| Sbjct 4103 GTGGCTGCCG 4094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166262831094568