Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_031098.1 Length=40749 Score E Sequences producing significant alignments: (Bits) Value seq124742 203 8e-48 >seq124742 Length=51505 Score = 203 bits (224), Expect = 8e-48 Identities = 339/487 (70%), Gaps = 10/487 (2%) Strand=Plus/Plus Query 503 CTGAATGTGCCTCAGGCTAACTTCCTACAATTACCAAATAAATTTAGAGCGTTCGTTGCT 562 || || || || |||||| | ||||| | | || | || || | ||||||||||| Sbjct 12171 CTTAACGTTCCCCAGGCTCAGTTCCTCACACTGCCCCACAAGTTCCGCGCGTTCGTTGCC 12230 Query 563 GGGTTTGGTTCAGGTAAAACATGGGTTGGTTGTTCAAGTCTTTGTGATAAGT-CTTGGTC 621 ||||| || || || || || ||||| || || ||| || | | | | | ||| Sbjct 12231 GGGTTCGGCTCGGGCAAGACCTGGGTGGGCTGCTCAGCCCTGAGCAAGCATTTCATGGAG 12290 Query 622 TTTCCC----TAAAGTTCCGTTGGGTTACTTTGCTCCAACGTATCCGCAGATCCGAGATA 677 | ||| | || || ||| |||||| || || || || ||||||||||| || | Sbjct 12291 TGGCCCGGCGTCAA----CGCTGG-TTACTTCGCACCGACTTACCCGCAGATCCGCGACA 12345 Query 678 TCTTTTTCCCTACGATTGATGAAGTAGCTTTCGATTGGGGATTGAAGACAAAGATCTATG 737 |||| | || || || ||||| || || | || ||||| ||||||| |||||| | Sbjct 12346 TCTTCTATCCGACCATGGATGAGGTGGCATATGAATGGGGGCTGAAGACCAAGATCAACC 12405 Query 738 AATCTAACAAAGAAGTTGATCTTTACTATGGCCGCCAATATCGAAGCACAATTATTTGCC 797 || | ||| | || ||| || | ||| ||||| || ||||| |||| | ||||||| Sbjct 12406 AAGCGAACCATGAGGTTCATATCTACAGCGGCCGGCAGTATCGCGGCACTGTGATTTGCC 12465 Query 798 GATCAATGGAAAAGCCCAATACTATTGTAGGTTTTAAGATTGGTCATGCGCTGATTGATG 857 | || ||||| ||||| | || ||||| ||||| ||||| || ||||| ||| | |||| Sbjct 12466 GGTCGATGGAGAAGCCGCAGACGATTGTCGGTTTCAAGATCGGCCATGCCCTGGTGGATG 12525 Query 858 AGCTTGATGTGATGACAAAGGTCAAGGCTCAACAAGCTTGGCGTAAGATCATTGCTCGTA 917 |||| || ||| |||| ||||||| || || || ||||| ||||||||||| || | Sbjct 12526 AGCTGGACGTGCTGACTGCCATCAAGGCACAGCAGGCCTGGCGCAAGATCATTGCCCGGA 12585 Query 918 TGCGATATAAACAAGCTGGTTTGTTGAACGGTATTGATGTTGCAACAACGCCAGAGGGCT 977 |||| || || | |||| || |||||| | || || |||| ||||| || |||| Sbjct 12586 TGCGCTACAACCTGCCTGGGCTGAAGAACGGGGTGGACGTCACAACGACGCCGGAAGGCT 12645 Query 978 TTAAGTT 984 | || || Sbjct 12646 TCAAATT 12652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130070257243432