Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20
2014-12-22] 132,476 sequences; 2,049,208,583 total letters
Query= NC_031249.1
Length=50127
Score E
Sequences producing significant alignments: (Bits) Value
seq75625 120 1e-22
>seq75625
Length=8981
Score = 120 bits (132), Expect = 1e-22
Identities = 272/404 (67%), Gaps = 34/404 (8%)
Strand=Plus/Minus
Query 42743 CGGCGAGGACGGCCAGTACGGGTTGGAGGCCTC-CCCAGCCGAATACGTCGAAACGATGC 42801
||||| |||||||||| |||| | |||| | | |||||| | | ||| | ||||
Sbjct 8981 CGGCGTGGACGGCCAGATCGGGCTTGAGGACACGCCCAGC-GCGTTCGTGGCCGAGATGG 8923
Query 42802 GAGCACTGTTCGCCGAACTGCGCCGCGTGCTCGCCGACGACGGAACCCTCTGGCTCAACT 42861
||| | |||||||| | ||||||||||| | | ||||| || |||||||||||
Sbjct 8922 TCGCAGTCTTCGCCGATGTCCGCCGCGTGCTTCGCAAGGACGGCACGCTCTGGCTCAATC 8863
Query 42862 TGGGTGACAGCTACTCAGGATCGTGGGGAAACCAGGGTCGCAAGGAGGAGCGTGGCACGC 42921
|||| ||||||||| | ||||| ||||| ||||| ||||| |||| | | |
Sbjct 8862 TGGGCGACAGCTACGCTGGATCCTGGGGCGCCCAGGC---CAAGG----GCGTCACGCCC 8810
Query 42922 AGCGGCCGATCAACGGCGGCATGATCACTCCTGTCCATGATGGCCGCTACCCGTCACGGG 42981
|||| ||||| | | || |||| |||| ||| ||||
Sbjct 8809 AGCGA--GATCAGCCGGAACAGCGTCACGAA---CCAT------------CCGAAGCGGG 8767
Query 42982 GGAGCAACACCGGTGCGATC----AAGCCGGGCGCACCACCCGCGAAGAACCTCATGGGA 43037
| | ||||| | ||| | ||||| | || | ||| ||| |||| || ||
Sbjct 8766 CCAAGCAGACCGGCACCATCCGGGAGGCCGGCCTCA--AGCCG--AAGGACCTGATCGGC 8711
Query 43038 ATGCCGTGGCGCGTCGCGTTCGCGCTCCAAGACGACGGCTGGATACTCCGCAACGACGTC 43097
|| |||||||||||||| |||||||| || | ||||||||| || ||| | ||| ||
Sbjct 8710 ATCCCGTGGCGCGTCGCCTTCGCGCTGCAGGCAGACGGCTGGTGGCTGCGCCAGGACATC 8651
Query 43098 ATCTGGCACAAGCCAAACGCTATGCCGGAGAGCATCACCGACCG 43141
|||||| ||||| ||| | ||||||||||||||| |||||
Sbjct 8650 ATCTGGTCGAAGCCCAACCCGATGCCGGAGAGCATCGAGGACCG 8607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160032647566168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |