Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Humulus_20lupulus_20var._20lupulus_20[genbank_20GCA_5F000831365.1_20 2014-12-22] 132,476 sequences; 2,049,208,583 total letters Query= NC_031249.1 Length=50127 Score E Sequences producing significant alignments: (Bits) Value seq75625 120 1e-22 >seq75625 Length=8981 Score = 120 bits (132), Expect = 1e-22 Identities = 272/404 (67%), Gaps = 34/404 (8%) Strand=Plus/Minus Query 42743 CGGCGAGGACGGCCAGTACGGGTTGGAGGCCTC-CCCAGCCGAATACGTCGAAACGATGC 42801 ||||| |||||||||| |||| | |||| | | |||||| | | ||| | |||| Sbjct 8981 CGGCGTGGACGGCCAGATCGGGCTTGAGGACACGCCCAGC-GCGTTCGTGGCCGAGATGG 8923 Query 42802 GAGCACTGTTCGCCGAACTGCGCCGCGTGCTCGCCGACGACGGAACCCTCTGGCTCAACT 42861 ||| | |||||||| | ||||||||||| | | ||||| || ||||||||||| Sbjct 8922 TCGCAGTCTTCGCCGATGTCCGCCGCGTGCTTCGCAAGGACGGCACGCTCTGGCTCAATC 8863 Query 42862 TGGGTGACAGCTACTCAGGATCGTGGGGAAACCAGGGTCGCAAGGAGGAGCGTGGCACGC 42921 |||| ||||||||| | ||||| ||||| ||||| ||||| |||| | | | Sbjct 8862 TGGGCGACAGCTACGCTGGATCCTGGGGCGCCCAGGC---CAAGG----GCGTCACGCCC 8810 Query 42922 AGCGGCCGATCAACGGCGGCATGATCACTCCTGTCCATGATGGCCGCTACCCGTCACGGG 42981 |||| ||||| | | || |||| |||| ||| |||| Sbjct 8809 AGCGA--GATCAGCCGGAACAGCGTCACGAA---CCAT------------CCGAAGCGGG 8767 Query 42982 GGAGCAACACCGGTGCGATC----AAGCCGGGCGCACCACCCGCGAAGAACCTCATGGGA 43037 | | ||||| | ||| | ||||| | || | ||| ||| |||| || || Sbjct 8766 CCAAGCAGACCGGCACCATCCGGGAGGCCGGCCTCA--AGCCG--AAGGACCTGATCGGC 8711 Query 43038 ATGCCGTGGCGCGTCGCGTTCGCGCTCCAAGACGACGGCTGGATACTCCGCAACGACGTC 43097 || |||||||||||||| |||||||| || | ||||||||| || ||| | ||| || Sbjct 8710 ATCCCGTGGCGCGTCGCCTTCGCGCTGCAGGCAGACGGCTGGTGGCTGCGCCAGGACATC 8651 Query 43098 ATCTGGCACAAGCCAAACGCTATGCCGGAGAGCATCACCGACCG 43141 |||||| ||||| ||| | ||||||||||||||| ||||| Sbjct 8650 ATCTGGTCGAAGCCCAACCCGATGCCGGAGAGCATCGAGGACCG 8607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160032647566168