Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq179 116 4e-21 >seq179 Length=2504955 Score = 116 bits (128), Expect = 4e-21 Identities = 303/459 (66%), Gaps = 5/459 (1%) Strand=Plus/Plus Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 |||||||||||||| || || ||||| |||| ||| | || || || || | |||| Sbjct 2366431 CATGCGAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAAC 2366490 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 || |||||| || || || || | ||| ||||| || || ||| || ||||| Sbjct 2366491 CCCGGCATCAGACCGCGCTTTTTCAGCCAGAATATGGCACAAAAACTCCCGGAGAAGAAG 2366550 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA 17143 || ||||| || | ||||| || | || || || ||| | | || | | | Sbjct 2366551 ATCCCCTCAACACAAGCAAAGGCCAACAAACGCTCAGCGAATGAT---TCCGAGCCATCA 2366607 Query 17144 ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTA 17203 ||||| | |||||| || || | || | || || || || || || | Sbjct 2366608 ATCCAGCGGAGAGCCCACTTAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGTGG 2366667 Query 17204 AATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATT 17263 || || | || || || | || | || || || || | || || |||||||| Sbjct 2366668 AACAACCTGTCCTTCTCTTCAGAATCCTTGATGTAAGTCTCCAACAGAAGACTGTACATC 2366727 Query 17264 TCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA-GCATCGGGCTTCCGCTAT 17322 || ||||| || ||||| ||||| ||||| ||||||||||| ||| || || ||||| | Sbjct 2366728 TCAGAGTGGATATTCTCGATGGCGATCTGGAATCCGTAAAACGCA-CGCGCCTCCGCAAC 2366786 Query 17323 TTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGC 17382 || || ||| ||| ||| | || ||||| || |||||||||||| ||||| Sbjct 2366787 CTGGACCTCCTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCGTCGGAGGCGGC 2366846 Query 17383 GAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC 17421 ||||| || | ||| |||||||| || | || ||||| Sbjct 2366847 AAAAAAGGCAAGTATGTGCTTAATAAAGTGCTTCTCGTC 2366885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517523487864240