Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq179 109 6e-19 >seq179 Length=2504955 Score = 109 bits (120), Expect = 6e-19 Identities = 307/468 (66%), Gaps = 5/468 (1%) Strand=Plus/Plus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || ||||| ||||| || | || || |||| ||| | || || || || | ||| Sbjct 2366431 CATGCGAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAAC 2366490 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAAT 16321 || ||||| || || || || | ||||||||| ||| ||| ||| || ||||| Sbjct 2366491 CCCGGCATCAGACCGCGCTTTTTCAGCCAGAATATGGCACAAAAACTCCCGGAGAAGAAG 2366550 Query 16322 ATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA 16381 || ||||||||| | ||||| || | || || || ||| | | | || | Sbjct 2366551 ATCCCCTCAACACAAGCAAAGGCCAACAAACGCTCAGCGAATGATTCCGAGCCATCA--- 2366607 Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441 ||||| | |||| | || || | | | ||| || || || || || | Sbjct 2366608 ATCCAGCGGAGAGCCCACTTAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGTGG 2366667 Query 16442 AACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATT 16501 ||||| | || || || | | ||| | || || || || | ||| | ||||||||| Sbjct 2366668 AACAACCTGTCCTTCTCTTCAGAATCCTTGATGTAAGTCTCCAACAGAAGACTGTACATC 2366727 Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAA-GCATCGAGCCTCCGCTAT 16560 || ||||| || ||||| ||||| ||||| ||||| || || ||| || |||||||| | Sbjct 2366728 TCAGAGTGGATATTCTCGATGGCGATCTGGAATCCGTAAAACGCA-CGCGCCTCCGCAAC 2366786 Query 16561 TTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGC 16620 || || ||| || ||| | || || ||||| ||||| ||||| || || Sbjct 2366787 CTGGACCTCCTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCGTCGGAGGCGGC 2366846 Query 16621 AAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAG 16668 |||||| || | |||||||||||| || | || ||||| || || || Sbjct 2366847 AAAAAAGGCAAGTATGTGCTTAATAAAGTGCTTCTCGTCGGAGGTTAG 2366894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511392549819760