Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1576 91.5 1e-13 >seq1576 Length=5940209 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || |||| || | || ||||| || || || ||| |||| | | Sbjct 2986234 ATGCAGATCTTTGTCAAGACCCTTACCGGCAAGACAATCACTCTCGAGGTGGAAAGCTCC 2986175 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | ||||| |||||| || |||||||| | ||| |||||| Sbjct 2986174 GACACCATTGACAACGTCAAGGCAAAAATCCAGGACAAAGAAGGAATCCCCCCAGATCAG 2986115 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || |||||||| || || || || | |||||| | ||| ||||||||||||| Sbjct 2986114 CAGAGGCTTATCTTCGCTGGAAAGCAGCTCGAAGATGGCCGAACCCTGGCCGATTACAAC 2986055 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||| ||||| ||||| ||||| ||||| Sbjct 2986054 ATTCAGAAGGAGTCTACCCTTCATTTGGTG 2986025 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || |||| || | || ||||| || || ||| || |||| | | Sbjct 2986006 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 2985947 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || ||||| |||||| || |||||||| | ||| |||||| Sbjct 2985946 GACACTATTGACAATGTCAAGGCAAAAATCCAGGACAAAGAAGGAATCCCCCCAGATCAG 2985887 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| || || || | || ||| | || ||||||||||||| Sbjct 2985886 CAGAGGCTTATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGCACCCTGGCCGATTACAAC 2985827 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATT 25252 || || ||||| ||||| ||||| ||||| | || || Sbjct 2985826 ATCCAGAAGGAGTCTACCCTTCATTTGGTGCTCCGTTT 2985789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410779687489052