Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq268 127 3e-24 seq1361 122 1e-22 seq813 84.2 3e-11 >seq268 Length=6919517 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || || || || |||||||| || |||| ||||| Sbjct 3332266 ATGCAAATCTTCGTGAAAACTCTGACTGGGAAAACTATCACCCTAGAAGTTGAAAGCTCG 3332207 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| || | || ||| ||||| ||||||||||| || || || ||||| Sbjct 3332206 GATACAATTGAGAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCCGATCAG 3332147 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||| || || ||||| | |||||| | ||||| ||| ||||| ||| Sbjct 3332146 CAGAGGTTGATTTTCGCGGGTAAACAGCTCGAGGATGGCCGAACCCTAGCCGATTACAAT 3332087 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||||||||| ||||| ||||| | | | || |||||||| Sbjct 3332086 ATCCAGAAAGAATCAACGCTGCATCTGGTTCTGAGGCTGCGCGGTGGTAT 3332037 >seq1361 Length=2134540 Score = 122 bits (134), Expect = 1e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || || || ||||| ||| | ||| |||| Sbjct 1709290 ATGCAGATCTTTGTAAAGACTCTTACTGGAAAGACTATTACTCTTGAGGTTGAGAGTTCC 1709349 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| |||| || ||||| |||||||| ||||| || || || ||||| Sbjct 1709350 GATACCATTGATAATGTTAAGGCA-AAAATCCAAGATAAGGAAGGAATTCCTCCAGATCA 1709408 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || |||||||||||||| || | || ||| | || ||| | | ||| ||||| Sbjct 1709409 ACAGCGACTGATTTTTGCAGGAAAGCAGCTTGAAGATGGCCGTACACTTGCAGACTATAA 1709468 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| || || || | || | || | ||| | || |||||||| Sbjct 1709469 TATCCAAAAGGAGTCTACCCTCCACCTTGTCCTTCGTCTGCGTGGTGGTAT 1709519 Score = 116 bits (128), Expect = 6e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | || || ||||| ||||| || || || | ||| |||| ||| | Sbjct 1709974 ATGCAGATCTTTGTGAAAACTCTAACTGGCAAGACCATCACACTTGAGGTTGAGAGCTCA 1710033 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| || ||||||||||||||||| || || ||||| || Sbjct 1710034 -GATACCATTGACAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGACCA 1710092 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||||||| ||||| ||||| || | || ||| | || || | | ||| || || Sbjct 1710093 ACAGAGGCTTATATTTGCTGGAAAGCAGCTTGAAGATGGCCGTACTCTTGCAGACTACAA 1710152 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| || || | ||| | || | ||| | || ||||| || Sbjct 1710153 CATCCAAAAAGAGTCCACCCTCCATCTTGTCCTCCGTCTGCGTGGTGGCAT 1710203 Score = 104 bits (114), Expect = 4e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | || || ||||| ||||| || || || | ||| |||| ||| | Sbjct 1709518 ATGCAGATCTTTGTGAAAACTCTAACTGGCAAGACCATCACCCTTGAGGTTGAGAGCTCA 1709577 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| || ||||||||||| ||||| || || || ||||| Sbjct 1709578 -GATACCATTGACAATGTAAAGGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 1709636 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || |||||||| ||||| || | || ||| | || || | | ||| || || Sbjct 1709637 ACAGAGACTGATTTTTGCTGGAAAGCAGCTTGATGATGGACGCACTCTTGCAGACTACAA 1709696 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || || || || | || | || | ||| | || |||||||| Sbjct 1709697 TATCCAGAAGGAGTCTACCCTCCACCTTGTCCTTCGTCTGCGTGGTGGTAT 1709747 Score = 104 bits (114), Expect = 4e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | || || ||||| ||||| || || || | ||| |||| ||| | Sbjct 1709746 ATGCAGATCTTTGTGAAAACTCTAACTGGCAAGACCATCACACTTGAGGTTGAGAGCTCA 1709805 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| || ||||||||||| ||||| || || || ||||| Sbjct 1709806 -GATACCATTGACAATGTAAAGGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 1709864 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || |||||||| ||||| || | || ||| | || || | | ||| || || Sbjct 1709865 ACAGAGACTGATTTTTGCTGGAAAGCAGCTTGATGATGGACGCACTCTTGCAGACTACAA 1709924 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || || || || | || | || | ||| | || |||||||| Sbjct 1709925 TATCCAGAAGGAGTCTACCCTCCACCTTGTCCTTCGTCTGCGTGGTGGTAT 1709975 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || ||||| || || || || || || | ||| ||||| Sbjct 1710430 ATGCAGATCTTTGTCAAAACACTTACTGGGAAGACCATCACCCTGGAGGTTGAAAGTTCA 1710489 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || || ||||| || ||||| || || || |||||| Sbjct 1710490 GATACCATTGACAATGTGAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCAGATCAA 1710549 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| |||||||| ||||| || | || ||| |||| ||| | | ||||| || Sbjct 1710550 CAAAGGCTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGTACACTTGCTGATTACAAC 1710609 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| || || | ||| | || | || | || ||||| || Sbjct 1710610 ATCCAAAAAGAGTCCACCCTACATCTTGTCCTCCGCCTTCGTGGTGGCAT 1710659 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | || || || || ||||| || || ||| | || |||| ||| Sbjct 1710202 ATGCAGATCTTTGTGAAAACTCTTACTGGCAAGACCATCACTCTTGAAGTTGAGAGCTCG 1710261 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| | || || ||||||||||| ||||| || || || ||||| Sbjct 1710262 -GATACCATTGACAATGTGAAGGCTAAGATTCAAGATAAGGAAGGGATTCCCCCAGATCA 1710320 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| ||||| |||||||| ||||| || | || ||| | || || | | ||| || || Sbjct 1710321 ACAGAGGCTGATTTTTGCCGGAAAGCAGCTTGAAGATGGCCGTACTCTTGCAGACTACAA 1710380 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| || || | ||| | || | || | || ||||| || Sbjct 1710381 CATCCAAAAAGAGTCCACCCTCCATCTTGTCCTCCGCCTGCGTGGTGGCAT 1710431 >seq813 Length=2089867 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 |||||| || || | ||||| || || || ||||| || ||| | ||| |||| ||| Sbjct 907659 AATGCAGATTTTCGTGAAGACCCTCACCGGAAAAACCATCACTCTTGAGGTTGAGAGCTC 907718 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| || || ||| | || || ||||| || || || || || || || || | Sbjct 907719 -TGACACCATAGACAATGTTAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCAGACC 907777 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| ||||||||||| || ||||| || ||| | | || ||| ||||||| Sbjct 907778 AGCAGAGGCTGATTTTTGCAGGGAAGCAATTGGAAGATGGAAGGACCCTAGCTGATTATA 907837 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 | || || || || || || |||| | || | ||| | || |||||| Sbjct 907838 ACATCCAGAAGGAGTCTACCCTGCACCTTGTCCTTCGTCTCCGTGGTGGT 907887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755423723142400