Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq268 102 1e-16 seq1361 95.1 2e-14 seq813 91.5 2e-13 seq2761 84.2 3e-11 >seq268 Length=6919517 Score = 102 bits (112), Expect = 1e-16 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | || || | |||| ||| | || |||||||| ||||| ||||| | Sbjct 3332040 CCACCGCGCAGCCTCAGAACCAGATGCAGCGTTGATTCTTTCTGGATATTGTAATCGGCT 3332099 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| || ||| || | ||||| || || |||||||| || |||||||| ||||| Sbjct 3332100 AGGGTTCGGCCATCCTCGAGCTGTTTACCCGCGAAAATCAACCTCTGCTGATCGGGAGGG 3332159 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||||||||| || ||||| || ||||| ||| Sbjct 3332160 ATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTCTCAATTGTATCCGAGCTTTCAACT 3332219 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| ||||| ||||| || || | ||||| | ||| |||||||| Sbjct 3332220 TCTAGGGTGATAGTTTTCCCAGTCAGAGTTTTCACGAAGATTTGCAT 3332266 >seq1361 Length=2134540 Score = 95.1 bits (104), Expect = 2e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || |||| |||||| | | |||||| | || |||||||||||||||| ||| Sbjct 1709699 ATATTGTAGTCTGCAAGAGTGCGTCCATCATCAAGCTGCTTTCCAGCAAAAATCAGTCTC 1709640 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| |||||||||||||| |||||||| Sbjct 1709639 TGTTGATCTGGAGGAATTCCTTCCTTATCTTG 1709608 Score = 95.1 bits (104), Expect = 2e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || |||| |||||| | | |||||| | || |||||||||||||||| ||| Sbjct 1709927 ATATTGTAGTCTGCAAGAGTGCGTCCATCATCAAGCTGCTTTCCAGCAAAAATCAGTCTC 1709868 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| |||||||||||||| |||||||| Sbjct 1709867 TGTTGATCTGGAGGAATTCCTTCCTTATCTTG 1709836 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 |||||||| |||| ||| || | || ||| || | || ||||| |||||||||| || Sbjct 1709471 ATATTATAGTCTGCAAGTGTACGGCCATCTTCAAGCTGCTTTCCTGCAAAAATCAGTCGC 1709412 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| |||||||||||||| |||||||| Sbjct 1709411 TGTTGATCTGGAGGAATTCCTTCCTTATCTTG 1709380 >seq813 Length=2089867 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || || || |||||||| || |||| || | || ||||| || || || ||||| Sbjct 1896400 GTCCCTCCCCTAAGTCTCAAAACCAGGTGAAGTGTTGATTCCTTCTGGATGTTGTAATCA 1896341 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||| || | ||| || || ||||| ||||||||||||| ||| |||||||| || Sbjct 1896340 GCCAGAGTCCTTCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGG 1896281 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||| || || Sbjct 1896280 GGGATACCTTCTTTGTCCTG 1896261 >seq2761 Length=3416969 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || |||| |||||| | || ||| || || || ||||||||||||||||| ||| Sbjct 2291796 ATATTGTAGTCTGCAAGAGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAAATCAACCTT 2291737 Query 146156 TGCTGATCCGGAGGAATTCCT 146176 |||||||| || || |||||| Sbjct 2291736 TGCTGATCAGGTGGGATTCCT 2291716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743494632834560