Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq179 89.7 5e-13 >seq179 Length=2504955 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 || |||||||| | ||| ||||| ||||||||||| || ||||| | ||| || Sbjct 2366140 TTCTGATATTCTCCAACCCTCTTCTCAAAGAAATTGGTCTTTCCCTGTAAGCTGATCAGC 2366199 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTA---TTTATCGCATCCCAATTCCAAC 16060 ||||| ||||||| ||| || ||||| || ||| ||| |||||||||| | Sbjct 2366200 TCCATCCAATCAAACGGA--TTCTGAAC-ATTGTACATCTTACTGCATCCCAATGCACCT 2366256 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCC 16116 | |||||||| |||||||||||||| || || |||| | ||| | ||||| || Sbjct 2366257 AGCAATCTATCAGCCACAAATTCTATGTATTGGCTCATCAGATCCCCATTCATCCC 2366312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462492239174800