Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq813 98.7 8e-16 seq1830 84.2 2e-11 >seq813 Length=2089867 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| ||||| | |||| ||||||||||||||| || || |||||||| || ||| Sbjct 1896397 CCTCCCCTAAGTCTCAAAACCAGGTGAAGTGTTGATTCCTTCTGGATGTTGTAATCAGCC 1896338 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | ||||||||| |||||||| ||| | || ||||| || ||||| ||| Sbjct 1896337 AGAGTCCTTCCATCTTCCAACTGTTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGGGGG 1896278 Query 18219 ACGCCTTCCTTATC 18232 | ||||| || || Sbjct 1896277 ATACCTTCTTTGTC 1896264 >seq1830 Length=882674 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| |||| || |||| || |||||||| || |||| |||||||||||| || Sbjct 346652 CCTCCCCTCAGTCGCAGCACCAAATGGAGTGTTGACTCCTTTTAAATGTTGTAGTCTGCA 346711 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||| || | || ||||| ||| | || |||| || ||||| ||| Sbjct 346712 AGTGTCCTCCCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGGA 346771 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || ||| | |||||| | | || ||| || || | ||| Sbjct 346772 ATGCCTTCCTTGTCCTGAATCT-TTGCTTTAACGTTGTCAATTGTATCTGAGCTCTCCAC 346830 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| | || || | || || || ||||| || ||||| Sbjct 346831 TTCCAATGTGATGGTCTTCCCTATTAAGGTCTTGACAAAGATCTGCAT 346878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379328197714410