Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq179 147 2e-30 seq688 118 9e-22 seq268 104 2e-17 seq302 100 3e-16 seq813 98.7 9e-16 seq1421 89.7 5e-13 >seq179 Length=2504955 Score = 147 bits (162), Expect = 2e-30 Identities = 373/561 (66%), Gaps = 11/561 (2%) Strand=Plus/Minus Query 57546 ATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTT 57605 ||||| |||||||| || || | || ||| | |||||||| || || | || || || Sbjct 2367005 ATGTTCCCGATTGAGTACCCGCAAATCTGGGAGATGTACAAGAAAGCCGTCGCGTCTTTC 2366946 Query 57606 TGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAA 57665 ||||| | || || || || || ||| ||||||| | | ||||| |||| | Sbjct 2366945 TGGACGGCGGAGGAGGTTGATCTCTCTCAGGATCTCCGTCAGTGGGAAGCCCTAACC--- 2366889 Query 57666 TCTGA-GAGAA--ATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATT 57722 || || ||||| | |||||||| ||| | | || ||||| ||||| ||||| || || Sbjct 2366888 TCCGACGAGAAGCACTTTATTAAGCACATACTTGCCTTTTTTGCCGCCTCCGACGGCATC 2366829 Query 57723 GTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGC 57782 ||| |||||| | | || | | || | || || || || |||||||| | ||| Sbjct 2366828 GTTTTGGAGAATCTCGCCGGACGGTTCATGAAGGAGGTCCAGGTTGCGGAGGCGCG-TGC 2366770 Query 57783 -TTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCAT 57841 ||||||||||| || | ||||| || || | || || || ||||| || || | Sbjct 2366769 GTTTTACGGATTCCAGATCGCCATCGAGAATATCCACTCTGAGATGTACAGTCTTCTGTT 2366710 Query 57842 CGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAAT 57901 || || ||| | ||||| || ||||| || ||||| ||||||| || || | Sbjct 2366709 GGAGACTTACATCAAGGATTCTGAAGAGAAGGACAGGTTGTTCCACGCGATTGATACTGT 2366650 Query 57902 GCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCAC 57961 |||| | | |||||||| ||||| | || ||||| | | | ||| | Sbjct 2366649 GCCCTGTGTGGAGAAGAAGGCTAAGTGGGCTCTCCGCTGGATTGA---TGGCTCGGAATC 2366593 Query 57962 GTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT 58021 ||||| ||| | | | || || || || || || || ||||| || || || || Sbjct 2366592 ATTCGCTGAGCGTTTGTTGGCCTTTGCTTGTGTTGAGGGGATCTTCTTCTCCGGGAGTTT 2366533 Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 | || ||||| ||| |||| || ||||| |||||||| || || | || || || Sbjct 2366532 TTGTGCCATATTCTGGCTGAAAAAGCGCGGTCTGATGCCGGGGTTGTCCTTCTCGAATGA 2366473 Query 58082 GTTGATATCGCGCGACGAGGG 58102 |||||| ||||| || ||||| Sbjct 2366472 GTTGATCTCGCGAGATGAGGG 2366452 >seq688 Length=8729492 Score = 118 bits (130), Expect = 9e-22 Identities = 125/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || || || ||||||||||| || || ||||||||| |||| |||||| Sbjct 4649448 CAAAAATGCAGATCTTTGTGAAGACTCTGACGGGGAAGACGATCACCCTCGAGGTTGAAT 4649507 Query 31248 CGTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 |||| |||| |||| | || || || || || ||||||||||||| | ||||| Sbjct 4649508 CGTCGGACACCATCGACAATGTGAAGGCAAAG-ATCCAGGACAAGGAAGGCATCCCGCCG 4649566 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||||||||||| || || ||||| ||||| ||| | || ||| Sbjct 4649567 GACCAGCAGCGGCTCATCTTCGCCGGCAAGCAGCTCGAGGAC 4649608 >seq268 Length=6919517 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 |||| ||||||||| || || || || || || || || |||||||| |||| || || Sbjct 3332956 TCAAGCATGCAAATCTTTGTGAAAACCCTTACCGGTAAGACGATCACTCTCGAGGTCGAG 3332897 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 ||||| | |||| | ||||| || || ||| |||||||| | ||||| Sbjct 3332896 AGCTCCGATACCATCGACAACGTCAAGGCGAAGATTCAGGATAAGGAAGGAATTCCGCCT 3332837 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GA 31365 |||||||||||||| || ||||| || |||||| | || ||| | || | ||| || Sbjct 3332836 GACCAGCAGCGTCTCATCTTCGCCGGGAAACAGCTCGACGACGGCAGAACCCT-AGCGGA 3332778 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| |||||||| || || || ||||| || || || || Sbjct 3332777 TTACAACATTCAGAAGGAGTCTACTCTGCACCTCGTGCT 3332739 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || |||| || || ||||| || |||| || || ||| Sbjct 3332722 ATGCAGATCTTCGTGAAAACCTTGACTGGTAAGACGATTACTCTCGAGGTCGAGAGTTCC 3332663 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | || ||| |||||||| | ||||| |||||| Sbjct 3332662 GATACGATCGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGAATTCCGCCTGACCAG 3332603 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 |||||||| || ||||| || || ||| | || ||| | || | ||| ||||| || Sbjct 3332602 CAGCGTCTCATCTTCGCCGGGAAGCAGCTCGACGACGGCAGAACCCT-AGCGGATTACAA 3332544 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || ||||| || || || || || || Sbjct 3332543 CATTCAGAAGGAATCAACACTCCACCTCGTGCT 3332511 >seq302 Length=4569211 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || ||||| || || ||||| || || || || ||| | || || ||| Sbjct 222634 CAAAGATGCAGATCTTCGTGAAAACCCTGACGGGGAAGACCATAACCCTGGAGGTGGAAT 222575 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | || || || ||| |||||||| || | || || | Sbjct 222574 CCTCCGACACCATCGACAATGTGAAGGCGAAAATTCAAGACAAGGAGGGAATCCCACCTG 222515 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || ||||| || || ||| |||| ||| ||| || || | Sbjct 222514 ACCAGCAGCGGCTCATCTTCGCCGGAAAGCAGCTGGAGGACGGGCGGACCTTGGCGGACT 222455 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 | ||||| || ||||| || ||||| || ||||| ||| Sbjct 222454 ACAACATCCAGAAAGAGTCTACTCTCCACCTGGTGCTT 222417 >seq813 Length=2089867 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| ||||| ||||| || ||||| | || |||||| || Sbjct 907431 CATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACCATCACACTGGAGGTTGAAAGCTC 907490 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || |||||||||||| | || || || || Sbjct 907491 AGACACCATTGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCCCCAGATCA 907550 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||| || |||||| |||| || ||| | ||||| || Sbjct 907551 GCAGAGGCTTATCTTCGCCGGAAAACAGCTGGAGGATGGCCGCACTCTTGCGGATTACAA 907610 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||| || || || ||||||||||| |||| || || || Sbjct 907611 CATCCAGAAGGAGTCGACTCTTCACTTGGTGCTCAGGCT 907649 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 |||||| ||||| | || || || |||||| | || || || ||||||||||||||||| Sbjct 1896263 GGACAAAGAAGGTATCCCCCCTGATCAGCAGAGACTGATTTTTGCTGGCAAACAGTTGGA 1896322 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | |||| || ||||| ||||| || || ||||| || ||||| ||||| | Sbjct 1896323 AGATGGAAGGACTCTGGCTGATTACAACATCCAGAAGGAATCAACACTTCACCTGGTTTT 1896382 Query 31405 TAGACTGAGGGGCGG 31419 ||||| ||||| || Sbjct 1896383 GAGACTTAGGGGAGG 1896397 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || ||||| ||||| | || ||||| || Sbjct 907660 ATGCAGATTTTCGTGAAGACCCTCACCGGAAAAACCATCACTCTTGAGGTTGAGAGCTCT 907719 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||| ||| | || || |||||| Sbjct 907720 GACACCATAGACAATGTTAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCAGACCAG 907779 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||| | || || || || || || || |||||||| | ||| | ||| |||||||| Sbjct 907780 CAGAGGCTGATTTTTGCAGGGAAGCAATTGGAAGATGGAAGGACCCT-AGCTGATTATAA 907838 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || || || || || || || || || ||| Sbjct 907839 CATCCAGAAGGAGTCTACCCTGCACCTTGTCCTT 907872 >seq1421 Length=9127415 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || || ||| | || |||||| || Sbjct 1342948 ATGCAGATCTTCGTTAAGACCCTCACCGGCAAGACCATTACCTTGGAGGTTGAAAGCTCG 1342889 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || || ||| ||||||||||||| | || || ||||| Sbjct 1342888 GATACGATTGACAACGTGAAGGCGAAAATCCAGGACAAGGAAGGCATCCCTCCTGACCAA 1342829 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||||||||| ||| | || || ||| | ||| || ||| Sbjct 1342828 CAGAGGCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGTACTCTTGCCGACTACAAC 1342769 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || ||||| |||| || || || ||||| || Sbjct 1342768 ATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCAGGCTCAGGGGTGG 1342722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445747354630560