Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq179 147 3e-30 seq418 87.8 2e-12 >seq179 Length=2504955 Score = 147 bits (162), Expect = 3e-30 Identities = 369/558 (66%), Gaps = 6/558 (1%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| ||||||||||||||||||| ||||| |||| || || || || || || | Sbjct 2366427 CAAGCATGCGAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGA 2366486 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 | || ||||| || || |||||||| ||||| ||||||| | || ||||| || Sbjct 2366487 CAACCCCGGCATCAGACCGCGCTTTTTCAGCCAGAATATGGCACAAAAACTCCCGGAGAA 2366546 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--AT-AACCGGCGCTGTC 33754 |||||| || || || ||||||||| | | | ||| | || | | | || | Sbjct 2366547 GAAGATCCCCTCAACACAAGCAAAGGCCAACAAACGCTCAGCGAATGATTCCGAGC---C 2366603 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 || ||||| ||||||| | |||||||| | ||||| |||| || || || || Sbjct 2366604 ATCAATCCAGCGGAGAGCCCACTTAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGC 2366663 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 | || | || || || | | ||| || | ||||| || | || |||||| || Sbjct 2366664 GTGGAACAACCTGTCCTTCTCTTCAGAATCCTTGATGTAAGTCTCCAACAGAAGACTGTA 2366723 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 33934 ||| || || || || || || ||||| ||||| |||||||| || | ||||| | Sbjct 2366724 CATCTCAGAGTGGATATTCTCGATGGCGATCTGGAATCCGTAAAACGCACGCGCCTCCGC 2366783 Query 33935 AATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGC 33994 || ||| || || | || ||| | || | ||| || || || || || ||| Sbjct 2366784 AACCTGGACCTCCTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCGTCGGAGGC 2366843 Query 33995 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 34054 |||||||| || | || || || ||||| | || ||||| | ||||| | ||| Sbjct 2366844 GGCAAAAAAGGCAAGTATGTGCTTAATAAAGTGCTTCTCGTCGGAGGTTAGGGCTTCCCA 2366903 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 | | || ||| | ||| | ||| || || ||| | ||||| || || || | || || Sbjct 2366904 CTGACGGAGATCCTGAGAGAGATCAACCTCCTCCGCCGTCCAGAAAGACGCGACGGCTTT 2366963 Query 34115 TTTATACATATTCCAGAT 34132 || ||||| | |||||| Sbjct 2366964 CTTGTACATCTCCCAGAT 2366981 >seq418 Length=2515040 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| |||||||| | || |||||||| || || |||||| || ||| | | | Sbjct 418772 AGTTCCAGCATTAAAAAGTGTTGGAGAAGCATGAGTGAACCATCCTTGAGACATCAAGTG 418713 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| ||| || || || || ||||| | || || || || | || | ||| || Sbjct 418712 GTATGTCCTGATGGCAGATTCAATATCATTCTTGTGGATCCCAACAGAAACTCTCATCAA 418653 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||| || || ||||| |||| ||| | | ||||| | ||| || |||| | Sbjct 418652 CATGTGTTGTGGCCTTTCCACAACTTTCCCCTGAACCTTCAAGAGGTAAGACCTTTCAAG 418593 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| ||||||||||| | || ||||||||| || || || || Sbjct 418592 GGTTTTGAAACCAAAATAATCATAATCAAAGTCTCGGTCATATATGAT 418545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629790691043040