Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1576 114 1e-20 seq268 91.5 1e-13 seq1361 89.7 5e-13 seq813 84.2 2e-11 seq302 84.2 2e-11 >seq1576 Length=5940209 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 ||||| | || || |||| |||||||| || || ||||| |||||| || |||| Sbjct 2985789 AAACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGG 2985848 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 || |||||||| || |||||| |||| || | |||||||| || || || |||||| Sbjct 2985849 CCATCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGGGGGATTCCTTCT 2985908 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||||||| || | | || | ||||||| | |||||||||| ||| Sbjct 2985909 TTGTCCTGGATTTTTGCCTTGACATTGTCAATAGTGTCGGAGCTTTCCACCTCAAGGGTG 2985968 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||||||||| | || || || || || ||||| Sbjct 2985969 ATTGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 2986006 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| |||||||| || |||||||| |||||| || || | |||||| Sbjct 2986026 ACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCCAGGGTTCGGCCATCTTCG 2986085 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || ||||| |||| || | |||||||| || || || ||||||||||| | Sbjct 2986086 AGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGG 2986145 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 |||||| || | | || | ||||||| | |||||||| | || | |||||| Sbjct 2986146 ATTTTTGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACCTCGAGAGTGATTGTCTTG 2986205 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || || || || || ||||| Sbjct 2986206 CCGGTAAGGGTCTTGACAAAGATCTGCAT 2986234 >seq268 Length=6919517 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || || ||||| |||||| | |||| | || ||||||||||| || Sbjct 3331842 GTGGATTCCTTCTGGATGTTGTAATCGGCTAGGGTGCGCCCATCCTCGAGCTGTTTCCCG 3331901 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | |||| || ||||| || ||||| |||||||| ||||| |||||| || Sbjct 3331902 GCGAAAATCAAGCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGGATTTTCGCCTTG 3331961 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||| |||| | ||||||||| | || | ||||| || || || || Sbjct 3331962 ACATTATCAATTGTATCGGAGCTCTCCACCTCCAGAGTGATTGTCTTCCCAGTTAATGTC 3332021 Query 139748 TTTACGAATATTTGCATA 139765 || |||||||| |||||| Sbjct 3332022 TTCACGAATATCTGCATA 3332039 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/204 (72%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 |||||||| || |||||||| ||||| ||| | || || ||| ||||||||||| || Sbjct 3332754 GTAGACTCCTTCTGAATGTTGTAATCCGCT-AGGGTTCTGCCGTCGTCGAGCTGTTTCCC 3332812 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TT 139685 || |||| ||||| ||||| || || || || ||||| || || ||| | || | | Sbjct 3332813 GGCGAAGATGAGACGCTGCTGGTCAGGCGGAATTCCTTCCTTATC-CTGAATCTTCGCCT 3332871 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | | | || | || |||| | ||| ||||| | || | |||||| ||||| | | Sbjct 3332872 TGACGTTGTCGATGGTATCGGAGCTCTCGACCTCGAGAGTGATCGTCTTACCGGTAAGGG 3332931 Query 139746 TTTTTACGAATATTTGCATAGCTT 139769 |||| || || |||||||| |||| Sbjct 3332932 TTTTCACAAAGATTTGCAT-GCTT 3332954 >seq1361 Length=2134540 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| | || |||| || || || | ||||||||| || |||||||| || || Sbjct 1710884 CCGCCCCTCAATCGCAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTGCA 1710825 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| ||| || || ||||||||||| ||| |||||| ||| || || || ||||| Sbjct 1710824 AGTGTCCTCCCATCCTCAAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGAGGA 1710765 Query 139658 ATGCCTTCTTTGTC 139671 |||||||| ||||| Sbjct 1710764 ATGCCTTCCTTGTC 1710751 >seq813 Length=2089867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || ||||| || ||| | || | | ||| ||| Sbjct 907184 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGCCCGTCCTCG 907125 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 |||||||| || || ||||||| | ||||| || || || || ||||| ||||| | Sbjct 907124 AGCTGTTTTCCGGCGAAGATCAGTCTCTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGG 907065 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||| | | ||||||||| | ||| | ||||| Sbjct 907064 ATCTTGGCCTTGACGTTATCGATGGTGTCAGAGCTCTCCACCTCGAGGGTGATAGTCTTT 907005 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||||| ||||| || ||||| Sbjct 907004 CCGGTTAGGGTTTTGACGAAGATCTGCAT 906976 >seq302 Length=4569211 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| || || || || | | ||| || ||||| || || Sbjct 222433 GTAGACTCTTTCTGGATGTTGTAGTCCGCCAAGGTCCGCCCGTCCTCCAGCTGCTTTCCG 222492 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||| || || ||||| || || || || || || ||||| ||| |||| | || Sbjct 222493 GCGAAGATGAGCCGCTGCTGGTCAGGTGGGATTCCCTCCTTGTC-TTGAATTTTCGCCTT 222551 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| || |||||||| | ||| | ||||| || |||| || Sbjct 222552 CACATTGTCGATGGTGTCGGAGGATTCCACCTCCAGGGTTATGGTCTTCCCCGTCAGGGT 222611 Query 139747 TTTTACGAATATTTGCAT 139764 ||| ||||| || ||||| Sbjct 222612 TTTCACGAAGATCTGCAT 222629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496042805665600