Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq418 95.1 2e-14 >seq418 Length=2515040 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 |||||||| || | ||||| || |||| ||| | || | | |||||||| ||| ||| Sbjct 419177 CCTCCCTGGTCAACATATCTTGCAGTGTCATTGAACACACGTAGCATTGGAACAATTCCA 419118 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||| ||||| ||||| || || || ||| | ||||| || ||| | || Sbjct 419117 TTGGATGTTCCATTCGTCCCACGAATGTAACTCCCAGTAGCACGGATGTTATGCACAGAG 419058 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| ||||| || || || |||| || || |||| |||||||| || Sbjct 419057 ACACCAATTCCACCCGCTGACTTGCTAATTACAGCACACTCCTTTAGAGTATCATATATA 418998 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||||| ||||||||||| ||||| | || || |||||| Sbjct 418997 CCCTCAATGCTATCATCTTTCATGCAGATAAGGAAGCAGCTA 418956 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| |||||||| | || |||||||| || || |||||| || ||||| | | Sbjct 418772 AGTTCCAGCATTAAAAAGTGTTGGAGAAGCATGAGTGAACCATCCTTGAGACATCAAGTG 418713 Query 80394 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAA 80453 ||| ||| || || ||||| ||||| | || || || || | || | ||| || Sbjct 418712 GTATGTCCTGATGGCAGATTCAATATCATTCTTGTGGATCCCAACAGAAACTCTCATCAA 418653 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||| || || ||||| || | || | | ||||| | |||||| |||| | Sbjct 418652 CATGTGTTGTGGCCTTTCCACAACTTTCCCCTGAACCTTCAAGAGGTAAGACCTTTCAAG 418593 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||| ||||||||||| | || ||||||||| || || || || Sbjct 418592 GGTTTTGAAACCAAAATAATCATAATCAAAGTCTCGGTCATATATGAT 418545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718238111965520