Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3197 86.0 8e-12 seq418 86.0 8e-12 >seq3197 Length=603451 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || ||||| || | |||| || || | ||| | || | | ||| |||| ||| ||| Sbjct 139559 CCCCCCTGGTCAACATATCGTGCAGTATCATTGAACACACGTACCATAGGAACAATTCCA 139500 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 |||||||| ||||| || || ||||| || ||| | |||||||||||| | || Sbjct 139499 TTGGATGCCCCATTTGTTCCACGAATATAACTCCCAGTAGCACGAATATTGTGCACAGAA 139440 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| ||||| ||||| ||| |||| || || || | |||||||| ||| Sbjct 139439 ATACCAATTCCTCCTGCTGATTTGCTAATTACAGCACACTCCTTGAGAGTATCATATATG 139380 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 || || || ||||| || ||||| | ||||| |||||| Sbjct 139379 CCATCAATGCTATCCTCTTTCATGCAGATAAGAAAGCAGCTA 139338 >seq418 Length=2515040 Score = 86.0 bits (94), Expect = 8e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 |||||| |||||||| | || |||||||| || || |||||| || ||||| | | Sbjct 418772 AGTTCCAGCATTAAAAAGTGTTGGAGAAGCATGAGTGAACCATCCTTGAGACATCAAGTG 418713 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGT--ATTCCTACCGCGACACGCATT 72534 ||| ||| || || ||||| ||||| ||| ||| || || || | || | ||| Sbjct 418712 GTATGTCCTGATGGCAGATTCAATATC--ATTCTTGTGGATCCCAACAGAAACTCTCATC 418655 Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCC 72594 ||||| || || || ||||| || | || | | ||||| | ||| || |||| Sbjct 418654 AACATGTGTTGTGGCCTTTCCACAACTTTCCCCTGAACCTTCAAGAGGTAAGACCTTTCA 418595 Query 72595 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 | ||||| ||||||||||| | || ||||||||| || || || || Sbjct 418594 AGGGTTTTGAAACCAAAATAATCATAATCAAAGTCTCGGTCATATATGAT 418545 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 71919 TCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT-CTAATCCAG 71977 |||||| |||| |||||| | | || || || || ||||| ||| | | | ||||||| Sbjct 419604 TCTTTCATATTCTGTATAAAGTTTCTCAAATTCTTCACCCCA-GCAATCTGCCAATCCAG 419546 Query 71978 GACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGA 72037 | ||||| ||||| | || ||||||| |||| | | |||| || |||||||| Sbjct 419545 GTGCCTCATTTGGACAAAATAAAGACCACTGCCCATTACTCTGCACTCTTTCCATAAAGA 419486 Query 72038 GATCAGGAATCCAAAGAGCTATAAATAGATCTC 72070 ||||||||| ||| ||||| ||| ||||||| Sbjct 419485 GATCAGGAACCCAGAGAGCATAAAAGAGATCTC 419453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671110525577680