Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1576 96.9 4e-15 seq418 84.2 2e-11 seq268 82.4 8e-11 >seq1576 Length=5940209 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 ||||| | || ||||||| ||||| || || || |||||||||||| || |||| Sbjct 2985789 AAACGGAGCACCAAATGAAGGGTAGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGG 2985848 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 || ||||| || || |||||| |||| || | |||||||| || || || |||||| Sbjct 2985849 CCATCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCTGGGGGGATTCCTTCT 2985908 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| |||||| || | | || | ||||| | | ||| || |||| || Sbjct 2985909 TTGTCCTGGATTTTTGCCTTGACATTGTCAATAGTGTCGGAGCTTTCCACCTCAAGGGTG 2985968 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | ||||||||||| | || || || || || ||||| Sbjct 2985969 ATTGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 2986006 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||||| ||||| || || || |||||||||||| || || | |||||| Sbjct 2986026 ACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCCAGGGTTCGGCCATCTTCG 2986085 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || || || ||||| |||| || | |||||||| || || || ||||||||||| Sbjct 2986086 AGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCCTGG 2986145 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 |||||| || | | || | ||||| | | ||| || || | ||| | |||||| Sbjct 2986146 ATTTTTGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCCACCTCGAGAGTGATTGTCTTG 2986205 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| | || || || || || ||||| Sbjct 2986206 CCGGTAAGGGTCTTGACAAAGATCTGCAT 2986234 >seq418 Length=2515040 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 156872 AATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttt 156931 |||| || || | |||||| | ||||| || ||||| | || |||| |||||| || Sbjct 420422 AATGTGTCAGCAAGACCTTGGACACCAATCCCAATGGGCCTGTGACGCAAATTAGAGTTC 420363 Query 156932 tttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCA 156977 ||||||||||||| ||| || || ||| |||||||||||| |||| Sbjct 420362 TTTGCAGTTTCAACAGGATAAAAGTTGACATCAATAATTTTGTTCA 420317 >seq268 Length=6919517 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| | ||| | || ||||| || || |||||||||||| Sbjct 3331812 CCACCGCGAAGACGGAGAACAAGATGGAGAGTGGATTCCTTCTGGATGTTGTAATCGGCT 3331871 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| | || ||||| ||||| || || | |||| || ||||| || ||||| Sbjct 3331872 AGGGTGCGCCCATCCTCGAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCTGGAGGA 3331931 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| ||||| || | | || | || || | | || || Sbjct 3331932 ATGCCTTCCTTGTCTTGGATTTTCGCCTTGACATTATCAATTGTATCGGAGCTCTCCACC 3331991 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || || ||||| || |||||||| |||||| Sbjct 3331992 TCCAGAGTGATTGTCTTCCCAGTTAATGTCTTCACGAATATCTGCATA 3332039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506992737809760