Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq179 114 2e-20 >seq179 Length=2504955 Score = 114 bits (126), Expect = 2e-20 Identities = 364/557 (65%), Gaps = 12/557 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||||| |||||||| || || || || || ||||||| || ||||| ||||| Sbjct 2366981 ATCTGGGAGATGTACAAGAAAGCCGTCGCGTCTTTCTGGACGGCGGAGGAGGTTGATCTC 2366922 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || |||| || | ||||| | | | || || ||| | ||||| | Sbjct 2366921 TCTCAGGATCTCCGTCAGTGGGAAGCCC--TAACCTCCGAC-GAGAAGCACTTTATTAAG 2366865 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||||| | ||||| ||||||| |||||| || ||||| || ||||| ||| Sbjct 2366864 CACATACTTGCCTTTTTTGCCGCCTCCGACGGCATCGTTTTGGAGAATCTCGCCGGACGG 2366805 Query 125199 TTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGC-TTTTACGGATTCCAAATCATG 125255 ||| | ||| | ||| || | |||| | ||||| |||||||||||||| ||| Sbjct 2366804 TTCATGAAGGAGGT--CCAGGTTGCGGAGGCG-CGTGCGTTTTACGGATTCCAGATCGCC 2366748 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 || ||||| | ||||| || |||||| | ||| | || | ||||| ||| | Sbjct 2366747 ATCGAGAATATCCACTCTGAGATGTACAGTCTTCTGTTGGAGACTTACATCAAGGATTCT 2366688 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 || || ||| | | || |||| || || || ||||| | | | || |||||| Sbjct 2366687 GAAGAGAAGGACAGGTTGTTCCACGCGATTGATACTGTGCCCTGTGTGGAGAAGAAGGCT 2366628 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| | || ||||| ||| | | | || | ||| || | || |||| Sbjct 2366627 AAGTGGGCTCTCCGCTGGAT---TGATGGCTCGGAATCATTCGCTGAGCGTTTGTTGGCC 2366571 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 || || || ||||| |||||||| || || |||||| ||||| || ||||| || Sbjct 2366570 TTTGCTTGTGTTGAGGGGATCTTCTTCTCCGGGAGTTTTTGTGCCATATTCTGGCTGAAA 2366511 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 |||||||| || ||||| || || | | || ||||| || || ||||| |||||| Sbjct 2366510 AAGCGCGGTCTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAGGGC 2366451 Query 125556 CTACACTGTGACTTTGC 125572 | ||||| || || || Sbjct 2366450 TTGCACTGCGATTTCGC 2366434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741027538245680